Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21j21
         (425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   1.9  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   3.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   4.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.6  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 208 LSMNGSW--IFCMCEVYPGGVCNPSFCVC 128
           LS+N S   I C+ +   GG C    C+C
Sbjct: 74  LSINHSACAIRCLAQRRKGGSCRNGVCIC 102


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 100 GVSNHMWHRLKNDDGDDKPCLK 35
           G+S   WH+ +   G  KP  K
Sbjct: 2   GISRDHWHKRRATGGKRKPIRK 23


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 108 TAPACQTICGTG*RTTTATINHV*SCVIYVAVVFTF 1
           T     T   TG R++   I++V +  IY+ + F F
Sbjct: 279 TTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVF 314


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 79   HRLKNDDGDDKPCLKLCNLCSCS 11
            HR +  + DDK C  +  + SC+
Sbjct: 1690 HRTQVKETDDKICFTMRPVVSCA 1712


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 13  YSYINYTTLNMVYRRRRR 66
           YS  N+T + +V+  RRR
Sbjct: 195 YSTGNFTCIQIVFNLRRR 212


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/26 (30%), Positives = 10/26 (38%)
 Frame = +1

Query: 10  NYSYINYTTLNMVYRRRRRSSTGATY 87
           NY Y NY   N  Y     ++    Y
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNY 113


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/26 (30%), Positives = 10/26 (38%)
 Frame = +1

Query: 10  NYSYINYTTLNMVYRRRRRSSTGATY 87
           NY Y NY   N  Y     ++    Y
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNY 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,153
Number of Sequences: 438
Number of extensions: 2328
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)