Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21j20
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    26   0.28 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         24   0.85 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   0.85 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.0  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -2

Query: 125 WRVKNVILSKKTVHCNCWLALKNQHNTVHV 36
           W  KN +        +CWL +   HN + V
Sbjct: 105 WNTKNCVNPYDRDSLSCWLQMTKHHNFIKV 134


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 153 SLPTPVANSPLSPVRQPPKSNIKPPTRI 236
           S+P  V + P+  +RQ  + NI+P T +
Sbjct: 20  SVPKVVYDGPIYELRQIEEENIEPDTEL 47


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 162 TPVANSPLSPVRQPPKSNIKPPTRISL 242
           TP +++P+SPV  P   ++  P R +L
Sbjct: 436 TPPSSNPVSPVPSPDPLDLAIPVRETL 462


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 144 RVKSLPTPVANSPLSPVRQPPKSNIKPPTRIS 239
           +V    +P+   P++PV++      +PP R+S
Sbjct: 11  KVDRSTSPLPRKPVNPVQELKALFAEPPVRVS 42


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +3

Query: 78  VTMNRFFRENNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIK---PPTRISLPT 248
           + +N  FR       P+   K  +K LPT      +  +R+P K+ ++       ++LPT
Sbjct: 316 IIINWNFRGPRTHRMPQLIRKIFLKYLPT------ILMMRRPKKTRLRWMMEIPNVTLPT 369

Query: 249 RTFSANPLE 275
            T+S +P E
Sbjct: 370 STYSGSPTE 378


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -1

Query: 300 LQCCC*CC 277
           + CCC CC
Sbjct: 9   MSCCCWCC 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,185
Number of Sequences: 438
Number of extensions: 3012
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)