Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21j19
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    30   0.22 
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    27   2.1  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   3.7  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    26   3.7  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   6.4  
SPAC824.06 |tim14||TIM23 translocase complex subunit Tim14|Schiz...    25   6.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.5  

>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 209 NFSNILLPL*GRF**YLGNISIKDNIIKTLCVCVF 105
           N   I +PL GR    +G   + DN++ T+CVC F
Sbjct: 527 NLLEIFVPLTGR----IGTDKVADNVVATVCVCGF 557


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 557 FERFSSFMHSNVFVAAVHFMI 495
           FER  SF+H+N  V A HF +
Sbjct: 558 FERAISFLHTNYPVEATHFAV 578


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -2

Query: 279 PNSTTC*LGSYMCRLIFL*TTIVEFFKYPLTVIGKVLIIFR*HINKRQYNKNFV 118
           P+S TC L +  C+LIF  T++      P  ++ K +  F  +  K+Q++K+ V
Sbjct: 588 PSSHTCALQAMYCQLIFSNTSV------PSAIVSKCVAFFW-NAAKKQHSKSSV 634


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 444 EKMPPRAKKLFVEAFTKYHKMNGGDEDIAMHKARKALEE 560
           E++ P++    V AF +Y K++  +ED   H  ++  E+
Sbjct: 47  EEIKPKSGDRLVAAFEEYEKLHPVEEDSTAHVNKEEAEK 85


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 247  YVSTYIFVNYDRRIFQISSYRYREGFDN 164
            Y+S Y F  +D       +YR  EGF+N
Sbjct: 991  YMSCYTFNYFDYACLMDHAYRLYEGFNN 1018


>SPAC824.06 |tim14||TIM23 translocase complex subunit
           Tim14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 462 AKKLFVEAFTKYHKMNGG 515
           A K+ V+AF KY  +NGG
Sbjct: 17  AGKIGVDAFRKYRNLNGG 34


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 513  GDEDIAMHKARKALEEKYVKINTLKNSWI 599
            GD  I + K R+ALE KYV  +   + WI
Sbjct: 2111 GDPAIFVQKNREALESKYVSAHL--HEWI 2137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,530
Number of Sequences: 5004
Number of extensions: 41991
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)