Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21j17
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    28   1.1  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.0  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    27   2.6  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    26   4.5  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    25   7.9  

>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 573 RGRRAQTAKFVWIIRDSMIFTADT-LDSKTFA*STLVRWTRLAGNA 439
           R RRA   K++W   DSM +  +T L++K+   S    W   AG A
Sbjct: 515 RARRAAMEKYLWSEADSMWYDYNTKLETKSTYESATAFWALWAGVA 560


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 127 YPLLGSTEIVPAGTGVMKISVSYDTTL 47
           YP++G   ++ AGTG M I++ YDT +
Sbjct: 418 YPMIGGWIVLLAGTGSM-IAIYYDTPI 443


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 573 GKKLSSCITSRTVRGRQYGVSVSAL*SLTYPSSHTHRIEALL 698
           G K+ SC+     RG+  G  V  + S ++  S  H ++ LL
Sbjct: 335 GIKIQSCLVGGFRRGKPVGADVDMVLSPSHTHSTKHLVDVLL 376


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 664 GYVSDYNADTETPYCRPRTVRDVMHDES 581
           G ++ +  + E PY RP+  + ++HD S
Sbjct: 183 GKITIFTREDEVPYDRPKLSKSLLHDIS 210


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 127 YPLLGSTEIVPAGTGVMKISVSYDTTL 47
           YP++G   ++ AGTG M I++ Y+T +
Sbjct: 418 YPMIGGWIVLLAGTGSM-IAIYYNTDI 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,169
Number of Sequences: 5004
Number of extensions: 58813
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)