Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21j17
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    25   0.92 
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    25   0.92 
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    25   0.92 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.5  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 448 GQRTRGRLFHHPIDK 404
           G+RT GR  H+ +DK
Sbjct: 134 GERTEGRCLHYTVDK 148


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 448 GQRTRGRLFHHPIDK 404
           G+RT GR  H+ +DK
Sbjct: 139 GERTEGRCLHYTVDK 153


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 448 GQRTRGRLFHHPIDK 404
           G+RT GR  H+ +DK
Sbjct: 139 GERTEGRCLHYTVDK 153


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -3

Query: 199 FSDADVVFQANANQLSHERYQAILYPLLGSTEIVPAGTGVMKISVSYDTTLKD 41
           F+ A+ V+      +SH +Y+A L+    S       +     + S  TT+ D
Sbjct: 319 FAKANAVYNPIVYGISHPKYRAALFAKFPSLACAAEPSSDAVSTTSGTTTVTD 371


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 557 CARRPRKEALVVHY 598
           C  RP   AL++HY
Sbjct: 122 CTERPEDGALILHY 135


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 557 CARRPRKEALVVHY 598
           C  RP   AL++HY
Sbjct: 122 CTERPEDGALILHY 135


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 17/80 (21%), Positives = 32/80 (40%)
 Frame = -3

Query: 280  LRPFSVHMLRLRRVDYKYFWGRRDHTEFSDADVVFQANANQLSHERYQAILYPLLGSTEI 101
            LRP+      +   + K FW R  +   S  D+  ++ ++ L ++R     Y L G   +
Sbjct: 1178 LRPYLRTAAAILTWNEKRFWERLRYAIPSAGDISIESKSSPLVYKR-NINTYTLDGVGSV 1236

Query: 100  VPAGTGVMKISVSYDTTLKD 41
               G   ++      +  KD
Sbjct: 1237 EKTGVSTLRGQERQRSLFKD 1256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,615
Number of Sequences: 438
Number of extensions: 4381
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)