Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21j13
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    29   0.13 
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   0.69 
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    26   1.2  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    24   4.9  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    23   6.5  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    23   6.5  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   6.5  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    23   8.5  

>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 150 RYKYEVICFSHFCVVFRLACLISCFCTCIC 239
           R  +E + F H C+++RLAC        +C
Sbjct: 94  RESFENLIFEHACLIYRLACTYHTTAISLC 123


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.6 bits (56), Expect = 0.69
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 22  IRVLLIYKTLXYYCFAMYKFL 84
           +RVLL  +T  YYCFA  ++L
Sbjct: 902 LRVLLKRETPNYYCFAQMEYL 922


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 262 LFILNXFPHMQVQKHEIKHANLKTT 188
           L + + FP + +Q +E+ H N++TT
Sbjct: 290 LHLNDPFPSVDLQSNELSHHNVRTT 314


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 40  YKTLXYYCFAMYKFLINKKYLTISLQFVC 126
           YK     CF+M  F     YLT+S  FVC
Sbjct: 494 YKYRRSQCFSMLSFAKYAIYLTLS-TFVC 521


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 106 ISLQFVCKLLVDLNSVISMK 165
           +SLQF C  L+  +S++S K
Sbjct: 70  VSLQFTCAYLLSQSSLLSWK 89


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +3

Query: 153 YKYEVICFSHFCVVFRLACLISCFCTCICGNXFNM 257
           +  E++ F  FC +    CLI  F      N  N+
Sbjct: 668 FSIELVVFPIFCGILLSMCLIGTFKKLAAENLLNV 702


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 22  IRVLLIYKTLXYYCFAMYKFLINKKYLTI 108
           +R L  ++T  +YC   +    NK YL I
Sbjct: 33  LRPLKSHRTHGHYCLLNFSLRENKNYLII 61


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 226 QKHEIKHANLKTTQK*LKQMTSYL*RYLNQLKVYKQ 119
           +KH I   N     + L Q+T YL  YL+   VYKQ
Sbjct: 225 KKHHIGAVNSINWARILSQITYYLYSYLS---VYKQ 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 850,682
Number of Sequences: 5004
Number of extensions: 12388
Number of successful extensions: 31
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)