Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21j13
         (284 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82284-3|CAB05293.1|  350|Caenorhabditis elegans Hypothetical pr...    30   0.31 
Z81541-5|CAE17831.2|  103|Caenorhabditis elegans Hypothetical pr...    26   5.0  
AF078790-3|AAC26933.1|  380|Caenorhabditis elegans Hypothetical ...    25   6.6  
AC006681-4|AAK85495.1|  380|Caenorhabditis elegans Hypothetical ...    25   6.6  
U38377-5|AAP46283.1|  300|Caenorhabditis elegans Map kinase kina...    25   8.7  
U38377-4|AAA79746.2|  347|Caenorhabditis elegans Map kinase kina...    25   8.7  

>Z82284-3|CAB05293.1|  350|Caenorhabditis elegans Hypothetical
           protein T27E7.4 protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 22  IRVLLIYKTLXYYCFAMYKFLINKKYLTISLQFVCKLLVDLNSVIS 159
           I +L++     YYCF    F    K L I +  +C + + + ++ S
Sbjct: 92  ISILVLVPFAVYYCFRSPDFSFLDKILLIPISIICAVFIYITTIFS 137


>Z81541-5|CAE17831.2|  103|Caenorhabditis elegans Hypothetical
           protein F48F5.6 protein.
          Length = 103

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 165 VICFSHFCVVFRLACLISCFCTCICG 242
           +I FS   V F L  LI  +CT  CG
Sbjct: 16  LIIFSATVVFFALIALILMYCTMSCG 41


>AF078790-3|AAC26933.1|  380|Caenorhabditis elegans Hypothetical
           protein F36H12.9 protein.
          Length = 380

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 10  KSXFIRVLLIYKTLXYYCFAMYKFL 84
           K  F R+L    TL YY    YKF+
Sbjct: 269 KKEFTRILKYLDTLGYYAVPDYKFI 293


>AC006681-4|AAK85495.1|  380|Caenorhabditis elegans Hypothetical
           protein R13H9.6 protein.
          Length = 380

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 10  KSXFIRVLLIYKTLXYYCFAMYKFL 84
           K  F R+L    TL YY    YKF+
Sbjct: 269 KKEFTRILKYLDTLGYYAVPDYKFI 293


>U38377-5|AAP46283.1|  300|Caenorhabditis elegans Map kinase kinase
           or erk kinaseprotein 1, isoform b protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 159 YEVICFSHFCVVFRLACLISCFCTCI 236
           Y V CF +F   F +   + C  TC+
Sbjct: 128 YIVRCFGYFITNFDVRVCMECMATCL 153


>U38377-4|AAA79746.2|  347|Caenorhabditis elegans Map kinase kinase
           or erk kinaseprotein 1, isoform a protein.
          Length = 347

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 159 YEVICFSHFCVVFRLACLISCFCTCI 236
           Y V CF +F   F +   + C  TC+
Sbjct: 128 YIVRCFGYFITNFDVRVCMECMATCL 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,528,328
Number of Sequences: 27780
Number of extensions: 68226
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)