Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21j13
         (284 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.32 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   0.55 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   0.55 
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   1.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 0.32
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +3

Query: 156 KYEVICFS--HFCVVFRLACLISCFCTCICGNXFNMNKSLI 272
           +YE  CF+  H C      C ++C   C C N    N + +
Sbjct: 738 RYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTWNTNAV 778


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 0.55
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 110 EIVRYFLFIRNLYI 69
           ++V+Y LF+ NLYI
Sbjct: 913 KVVKYHLFLTNLYI 926


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 0.55
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 110 EIVRYFLFIRNLYI 69
           ++V+Y LF+ NLYI
Sbjct: 951 KVVKYHLFLTNLYI 964


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -1

Query: 254 IKXISTYAGTKTRNQTR*SKNYTKMTKTNDFILITLFKSTKSLQTNCREI 105
           ++ + + AG  + +Q       T +T  ND +  T   S +    +CR I
Sbjct: 77  LRLLCSIAGGTSESQWEDVTGSTPLTFVNDTVSFTTTVSARFWLMDCRNI 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,108
Number of Sequences: 438
Number of extensions: 763
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)