Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21j08
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 2.3
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 29 2.3
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr... 29 3.1
U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical p... 28 4.0
Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical p... 28 5.3
Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical pr... 28 5.3
U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical pr... 28 5.3
AF039038-8|AAM81097.1| 874|Caenorhabditis elegans Hypothetical ... 28 5.3
AF039038-7|AAM81098.1| 942|Caenorhabditis elegans Hypothetical ... 28 5.3
Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81493-10|CAB04044.2| 508|Caenorhabditis elegans Hypothetical p... 27 9.3
Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical p... 27 9.3
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot... 27 9.3
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot... 27 9.3
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 9.3
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 9.3
>Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical
protein W09D12.1 protein.
Length = 472
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 453 RLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVK 316
RL+I I GLS+ +STPS V++ P L S+V++ L +
Sbjct: 260 RLAIRKIYGLSSVDHSTPSSDVDRSKCPKHLDSVVAINDQEWLFFR 305
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
R03E1.1 protein.
Length = 1043
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 341 VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 442
+T + SIPG I+ + GV+ ++RP +VK
Sbjct: 992 LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 341 VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 442
+T + SIPG I+ + GV+ ++RP +VK
Sbjct: 992 LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025
>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
protein K06C4.15 protein.
Length = 1067
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 435 IDGLSTEHNSTPSFSVNKMGSPGML 361
I L T H STPS ++ SPGM+
Sbjct: 142 ISDLRTPHGSTPSTGTPRLSSPGMV 166
>U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical
protein B0507.1 protein.
Length = 615
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 369 PENPFCLQKTRGCCCAPSTD 428
PEN FC + T G CC P D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184
>Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 23 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 142
V+ K+R + E V +DEK+ KT+E E K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196
>Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical
protein F02E9.9a protein.
Length = 707
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 23 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 142
V+ K+R + E V +DEK+ KT+E E K + SLES E
Sbjct: 120 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 158
>Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 23 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 142
V+ K+R + E V +DEK+ KT+E E K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196
>U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical
protein K09E3.1 protein.
Length = 675
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 435 IDGLSTEHNSTPSFSVNKMGSPGML 361
I L T H STPS ++ SPGM+
Sbjct: 222 ISDLRTLHGSTPSTGTPRLSSPGMV 246
>AF039038-8|AAM81097.1| 874|Caenorhabditis elegans Hypothetical
protein K06A5.8a protein.
Length = 874
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 128 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 27
N LDF+ ++P+ F FG+F + FEL C+
Sbjct: 80 NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114
>AF039038-7|AAM81098.1| 942|Caenorhabditis elegans Hypothetical
protein K06A5.8b protein.
Length = 942
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 128 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 27
N LDF+ ++P+ F FG+F + FEL C+
Sbjct: 80 NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114
>Z92796-5|CAB07233.1| 518|Caenorhabditis elegans Hypothetical
protein H25K10.6 protein.
Length = 518
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 56 IVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLS 190
I++S ++ E+A D +NLS L ET+ K + M ML+
Sbjct: 247 ILSSIRNVRGDVEIAATDFENLSFLTGLETITSKHSYLSKMTMLN 291
>Z81493-10|CAB04044.2| 508|Caenorhabditis elegans Hypothetical
protein F01D5.9 protein.
Length = 508
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = -2
Query: 189 LSIAMYLLSANLIFRVS*LSKLLRFFK 109
+ IA+YLL+ +I+ V LSK+L+F K
Sbjct: 1 MGIAVYLLALVVIYVVFNLSKILKFVK 27
>Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical
protein ZK1098.3 protein.
Length = 784
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 8 IKMKRVKCNKVRTVTEIVNSDEKIQKTY 91
I + + C+KV+ V E++ +K+QK+Y
Sbjct: 200 ITLPLILCDKVQIVDELLKISKKLQKSY 227
>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
protein.
Length = 2693
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = -2
Query: 426 LSTEHNSTPSFSV-----NKMGSPGMLVSLVSVTTNSILLVKLVTSGWNLXCIKANVLNT 262
++ E + TP+ SV N P + + + +T+SIL +K C+ N L
Sbjct: 1428 IAVEFSGTPTPSVKWYKENLQIVPDEKIDVATTSTSSILNLKSQEENGTFNCLIENELGQ 1487
Query: 261 TAAICRVS 238
+A C+V+
Sbjct: 1488 ASASCQVT 1495
>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
protein.
Length = 2708
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = -2
Query: 426 LSTEHNSTPSFSV-----NKMGSPGMLVSLVSVTTNSILLVKLVTSGWNLXCIKANVLNT 262
++ E + TP+ SV N P + + + +T+SIL +K C+ N L
Sbjct: 1443 IAVEFSGTPTPSVKWYKENLQIVPDEKIDVATTSTSSILNLKSQEENGTFNCLIENELGQ 1502
Query: 261 TAAICRVS 238
+A C+V+
Sbjct: 1503 ASASCQVT 1510
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = -2
Query: 426 LSTEHNSTPSFSV-----NKMGSPGMLVSLVSVTTNSILLVKLVTSGWNLXCIKANVLNT 262
++ E + TP+ SV N P + + + +T+SIL +K C+ N L
Sbjct: 17254 IAVEFSGTPTPSVKWYKENLQIVPDEKIDVATTSTSSILNLKSQEENGTFNCLIENELGQ 17313
Query: 261 TAAICRVS 238
+A C+V+
Sbjct: 17314 ASASCQVT 17321
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = -2
Query: 426 LSTEHNSTPSFSV-----NKMGSPGMLVSLVSVTTNSILLVKLVTSGWNLXCIKANVLNT 262
++ E + TP+ SV N P + + + +T+SIL +K C+ N L
Sbjct: 17269 IAVEFSGTPTPSVKWYKENLQIVPDEKIDVATTSTSSILNLKSQEENGTFNCLIENELGQ 17328
Query: 261 TAAICRVS 238
+A C+V+
Sbjct: 17329 ASASCQVT 17336
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,647,540
Number of Sequences: 27780
Number of extensions: 250694
Number of successful extensions: 707
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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