Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21j06
(554 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 30 0.97
Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical pr... 30 0.97
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 30 0.97
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 29 2.2
AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical... 29 2.2
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z81078-1|CAB03075.3| 441|Caenorhabditis elegans Hypothetical pr... 29 3.0
U80454-4|AAB37876.3| 896|Caenorhabditis elegans Prion-like-(q/n... 29 3.0
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 29 3.0
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 29 3.0
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 29 3.0
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 29 3.0
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 29 3.0
AL110498-2|CAB54468.1| 254|Caenorhabditis elegans Hypothetical ... 27 9.1
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 27 9.1
>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
F26A3.3 protein.
Length = 1632
Score = 30.3 bits (65), Expect = 0.97
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 354 VWCGNESLARCPCAAIGAMSLFEGLKCPEIHCVC 253
V G L + PC G + +FE + PE+H +C
Sbjct: 920 VLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMC 953
>Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical
protein F58H1.5 protein.
Length = 323
Score = 30.3 bits (65), Expect = 0.97
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 153 LGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNI 257
+ + +++P Q S+N+FVS SDI I + D +
Sbjct: 28 ISDEKFEPAEQCSSNQFVSISDIGTIYDSEDTQQL 62
>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
polymerase relatedEGO-1 protein.
Length = 1632
Score = 30.3 bits (65), Expect = 0.97
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 354 VWCGNESLARCPCAAIGAMSLFEGLKCPEIHCVC 253
V G L + PC G + +FE + PE+H +C
Sbjct: 920 VLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMC 953
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
protein F26A3.8 protein.
Length = 1601
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 345 GNESLARCPCAAIGAMSLFEGLKCPEIHCVC 253
G L + PC G + +FE + PE+H +C
Sbjct: 896 GTVLLTKNPCIVPGDVRIFEAVDIPELHHMC 926
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
C05C9.3 protein.
Length = 1225
Score = 29.1 bits (62), Expect = 2.2
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +3
Query: 180 YQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRM-DNVPDFHYHTKQ 356
+QL N + R + + ++N + Q NS +Q ++ + + ++H +Q
Sbjct: 1064 HQLVNKVRPHYQQQGEMKRQDGMHQMQNQLHHHQNFQFNSGQQATQVHEQQQNQNHHVRQ 1123
Query: 357 TRSNAVRQNFPETNVRTPEGVQNALQQNPRLHN 455
V Q+FP +V+ Q QQN R H+
Sbjct: 1124 AVQEEVFQSFPRHDVQRHIHGQTNYQQNQRQHS 1156
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 345 GNESLARCPCAAIGAMSLFEGLKCPEIHCVC 253
G L + PC G + +FE + PE+H +C
Sbjct: 896 GTVLLTKNPCIVPGDVRIFEAVDIPELHHMC 926
>AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical
protein Y73B3A.7 protein.
Length = 205
Score = 29.1 bits (62), Expect = 2.2
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +3
Query: 174 PGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTK 353
P L NR V + + + NND N +N Q I PQ+ ++ +R+ Y K
Sbjct: 3 PKNLLKKNRIVIEASLV-LHNNNDNNNNKNRMQMIMAPQLRRIQMVRK----SIMGYRGK 57
Query: 354 QTRSNAVRQNFPETNVRTPEGVQNALQQ-NPRLH 452
+ ++ T+ R P +N Q RLH
Sbjct: 58 RKTDQQLKSTNNPTSSRLPLNTKNVAQALGGRLH 91
>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
protein W10C6.1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 3.0
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Frame = +3
Query: 27 TNLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFV 206
T+L ++ + AS L D TR++ TP F+ + R+ G+ P L ++ V
Sbjct: 28 THLTQMCRRGDTNASLLRDFTRMIRDTPRNFSKNTQHGNDRDFGDLERDPDVDLLLSK-V 86
Query: 207 STSDINRITRNNDVPNIRNVF--QGISDPQINSLRQLRRMDNVPDFHYHTKQTRSNAVRQ 380
+ + +P +F +SD IN + + + + + TR N + +
Sbjct: 87 CLECVYVEPKEGAIPKANKIFISNFLSDMYINLVSVTGEVMKIIPIWKNAETTRKNLLEK 146
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 147 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 266
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>Z81078-1|CAB03075.3| 441|Caenorhabditis elegans Hypothetical
protein F36H2.2 protein.
Length = 441
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 43 SINCILIRPVFLLIIRVF*QALPPVSQMCSTRP 141
S N + + P +LLII AL P+ MC+ RP
Sbjct: 335 SANSLRLSPKYLLIISFLRFALIPMIAMCNVRP 367
>U80454-4|AAB37876.3| 896|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 66
protein.
Length = 896
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 123 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRN 263
NV NAP+V+N N + Q N + + N R ND PN++N
Sbjct: 611 NVQNAPNVQNASNVQNSQNGQNDKNDPNAQNSQNGQNRQND-PNVQN 656
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 147 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 266
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 147 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 266
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +2
Query: 317 HGQRARLSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHXNLESSRSGHT 493
H +LSLPH A+ + T R++ + S P ++ +GH
Sbjct: 781 HPALQQLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHI 840
Query: 494 LGRRRLSFVYRRH 532
GR +SFVY H
Sbjct: 841 FGRIEVSFVYSHH 853
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +2
Query: 317 HGQRARLSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHXNLESSRSGHT 493
H +LSLPH A+ + T R++ + S P ++ +GH
Sbjct: 781 HPALQQLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHI 840
Query: 494 LGRRRLSFVYRRH 532
GR +SFVY H
Sbjct: 841 FGRIEVSFVYSHH 853
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +2
Query: 317 HGQRARLSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHXNLESSRSGHT 493
H +LSLPH A+ + T R++ + S P ++ +GH
Sbjct: 781 HPALQQLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHI 840
Query: 494 LGRRRLSFVYRRH 532
GR +SFVY H
Sbjct: 841 FGRIEVSFVYSHH 853
>AL110498-2|CAB54468.1| 254|Caenorhabditis elegans Hypothetical
protein Y64G10A.3 protein.
Length = 254
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 254 HTQCISGHF---RPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSK 424
HT+ ++ HF RPSNK++ A+ ++ LP +T +T+L R + H+R C
Sbjct: 137 HTKFVA-HFLANRPSNKILGIAASKVCKSEEELPRET------RTELARLRCGHSRLCGA 189
Query: 425 RTA 433
A
Sbjct: 190 YVA 192
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 351 WCGNESLARCPCAAIGAMSLFEGLKCPEIHCVCWGHRCYE 232
W E+ C+A G++ L++ P+ CVC + +E
Sbjct: 283 WSPTETGLLASCSADGSIKLWDTRSAPKDACVCTVQKAHE 322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,170,244
Number of Sequences: 27780
Number of extensions: 300368
Number of successful extensions: 772
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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