Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21j05
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    78   1e-15
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    53   3e-08
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    37   0.002
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    36   0.005
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    35   0.008
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    33   0.034
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    30   0.32 
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    26   5.2  
SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.8  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   9.0  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 38/89 (42%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
 Frame = +1

Query: 217 RGGWTTLEVTG-GVRALAPPLFQLTHLTALYLNDNSLQRIPTDINQLVNLHTLDISNNKL 393
           R  WT L++ G G+R ++  LF+ + LT LY+N N+L R+P +I +L NL  LD S N +
Sbjct: 157 RRDWTCLDLGGIGLRNVSTDLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSI 216

Query: 394 RSLPVELGDLIQLRELHLHNNYLRALPYE 480
           +++P ELG L +LRE+ L +N +  +P E
Sbjct: 217 KTIPPELGLLTELREVLLFDNMISVIPAE 245


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 25/74 (33%), Positives = 41/74 (55%)
 Frame = +1

Query: 253 VRALAPPLFQLTHLTALYLNDNSLQRIPTDINQLVNLHTLDISNNKLRSLPVELGDLIQL 432
           ++++ P + + T L  L +  N L+  P  + +L +L  LDIS NK++ LP   G L+ L
Sbjct: 64  IKSIGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNL 123

Query: 433 RELHLHNNYLRALP 474
           + L +  N L  LP
Sbjct: 124 KVLSISKNRLFELP 137



 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = +1

Query: 253 VRALAPPLFQLTHLTALYLNDNSLQRIPTDINQLVNLHTLDISNNKLRSLPVELGDLIQL 432
           +R     L +L  L  L ++ N ++++P     L+NL  L IS N+L  LP  +  +  L
Sbjct: 87  LREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNL 146

Query: 433 RELHLHNNYL 462
             L + NN++
Sbjct: 147 EILKIENNHI 156


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 23/53 (43%), Positives = 32/53 (60%)
 Frame = +1

Query: 313 DNSLQRIPTDINQLVNLHTLDISNNKLRSLPVELGDLIQLRELHLHNNYLRAL 471
           +N L  + T  + L+NL  LDIS N+L  L   L  LI LREL + +N+L +L
Sbjct: 655 ENRLSSL-TSFSNLLNLQYLDISYNQLEDL-TGLSSLIHLRELKVDSNHLWSL 705


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
 Frame = +1

Query: 301 LYLNDNS--LQRIPTDIN-QLVNLHTLDISNNKLRSLPVELGDLIQLRELHLHNN 456
           LYL  +S  L+ IP ++   L +L +LD+S N+L  +P  LG+L QL  L+L +N
Sbjct: 335 LYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASN 389


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +1

Query: 292 LTALYLNDNSLQRIPTDINQLVNLHTLDISNNKLRSLPVELGDLIQLRELHLHNNYL 462
           L  L + +N L  +P     LVNL  LD+S N   + P+ + +L QL  L+  +N L
Sbjct: 504 LKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLL 560



 Score = 34.7 bits (76), Expect = 0.011
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 283 LTHLTALYLNDNSLQ-RIPTDINQLVNLHTLDISNNKLRSLPVELGDLIQLRELHLHNNY 459
           L  L  LYL  N L  R+P +I  L NL T+D+S N + ++   L +  +L  +++  N 
Sbjct: 570 LVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSYNAITNI-ASLSECPKLNSINVACNL 628

Query: 460 LRALPY 477
           L    Y
Sbjct: 629 LSFYEY 634



 Score = 32.3 bits (70), Expect = 0.059
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +1

Query: 292  LTALYLNDNSLQRIPTDINQLVNLHTLDISNNKLRSLPVELGDLIQLREL 441
            L  LY N N L   P +     +L  LDIS N L++L VE  +   L +L
Sbjct: 879  LETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKL 928


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 33.1 bits (72), Expect = 0.034
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 283 LTH-LTALYLNDNSLQRIPTDINQLVNLHTLDISNNKLRSLPVELGDLIQLRELHLHNNY 459
           L+H L  LY++ N L    + I  L NL  LD+SNN ++ L   L  L  L EL   NN 
Sbjct: 213 LSHCLRELYVSHNGLTSF-SGIEVLENLEILDVSNNMIKHLSY-LAGLKNLVELWASNNE 270

Query: 460 L 462
           L
Sbjct: 271 L 271


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 88  HNCSIRF*GVDEGDSMSRNKDKHEGASGRTYHIMSEAERASGRRGGWTTL 237
           H   +   G D+ D +S+   +     G T H+  +AE   GR+ G  T+
Sbjct: 312 HALMVNILGTDDPDYVSKIAKRSLSIPGATLHLYGKAESRKGRKMGHVTI 361


>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 246 CYLKSSPTSSTTRGSFCFRHDMV-CAPTRALVLVFVARHTVTFIYSLKPY 100
           C +K +    TT  +F ++H +V C  +RA     +A  TV  +  + PY
Sbjct: 54  CLIKMN--HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPY 101


>SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = -3

Query: 225 TSSTTRGSFCFRHDMV----CAPTRALVLVFVARHTVTFIYSLKPYTAIMIIVTGNKSL* 58
           T + T GS+  R   +     +PT A     VA  T   +YS     A + + TGN  + 
Sbjct: 70  TVTETAGSYAKRSIEIDSDSVSPTSATTTTPVASATDVSVYS-----ASIHVPTGNPPVD 124

Query: 57  THNSTVFDNQPHQTSIY 7
           THN   +D +   T+ +
Sbjct: 125 THNPLSYDTEVTATTTF 141


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 540  DAVDIQR-LQRNRQADHVHARQLARYAYHIF 629
            D VD  +  QRN++   +  R   +Y YH+F
Sbjct: 1002 DEVDFPKNQQRNKEKFRIQKRPNKKYRYHLF 1032


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,862
Number of Sequences: 5004
Number of extensions: 40737
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)