Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21j02
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   1.5  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.6  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   3.4  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    26   5.9  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   7.8  
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    25   7.8  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect(2) = 1.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 442 SEDENVLDFIIED 480
           SED+N+LDFI+ D
Sbjct: 624 SEDDNLLDFILRD 636



 Score = 21.0 bits (42), Expect(2) = 1.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 415 DIIVNAQINSEDEN 456
           ++IVN +I S DEN
Sbjct: 585 EVIVNGRIISHDEN 598


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = -3

Query: 216 PQSCSILPRSSFVFRFQRCMCPRNENHIRNVSITYKIIET*IDLIKNNRLNFSDNVSRFN 37
           P     L   +  FRFQ  +C    + +++ S       T + LI ++ +NF + V ++ 
Sbjct: 38  PSGIQELDNCTIFFRFQDQLCLSVFSKLQHPSFERSAFFTSVGLILSDDINFGEAVVKYG 97

Query: 36  ST 31
            T
Sbjct: 98  ET 99


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 263 FYLLMAHRV*PHGSLPPNPAQFCHEAVSCFGSKGVCVHAMKTISETFQSRT 111
           F+  + H +  HG L  N  +  +E  +  G+KG+ + A++ I+   Q  T
Sbjct: 550 FFAYIVHLL--HGVLNRNNVKLIYETAALTGAKGLQLRALRRIARIEQGGT 598


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 261 LSFNGASGVAAWVATPQSCSIL 196
           + +NG  G A W+A+  +C IL
Sbjct: 550 VEWNGNKGYAGWLASGMACGIL 571


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +1

Query: 430 AQINSEDENVLDFIIEDEYYLKKR--GVGAHIIKVASSPQLRLLYKNAYSAVSCGNYSIL 603
           A +  +D   L F+ E + +  +    V  + +  +S   + LL+   +++++ G  ++ 
Sbjct: 582 AVVPHDDGINLSFMCESKVFDLESVDSVTCNYVLSSSKNPMNLLF-TLHNSITDGKLNVH 640

Query: 604 CNLVQNGEYDLNAIMFNCAEIKLN 675
           CN +  G Y L  I+F   +  L+
Sbjct: 641 CNDIIPGRYHLKTIVFKLKDSVLS 664


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 487 YLKKRGVGAHIIKVASSPQLRLLYKNAYSAVSCGNYS 597
           Y    G+ A +++  S  +L L++   Y+A   GN S
Sbjct: 62  YCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVS 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,909
Number of Sequences: 5004
Number of extensions: 58693
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)