Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21j02
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0414 + 3183292-3183735,3184547-3184969,3185435-3185535,318...    30   2.0  
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562...    29   3.5  
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    28   8.1  
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178...    28   8.1  
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716...    28   8.1  
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    28   8.1  

>03_01_0414 +
           3183292-3183735,3184547-3184969,3185435-3185535,
           3186178-3187439,3187625-3187665,3187777-3187845,
           3187975-3188075,3188413-3188491,3188570-3188668,
           3188757-3188825,3188918-3188967,3189211-3189387,
           3189496-3189634
          Length = 1017

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 235 SRMGRYPPILLNSATKQFRVSVPKVYVSTQ*KPYQKRFNHVQDNRNLNRFNKK 77
           SR+G  PPI  +         +P   V  Q K +++ F+  QDN+ L+   KK
Sbjct: 637 SRLGDQPPIERHKWGNSVEGRIPTGTVHNQAKEHKENFDGKQDNKKLHPDPKK 689


>04_03_0659 -
           18453778-18453903,18453976-18454963,18455496-18456229,
           18456292-18456360,18456528-18456605,18456703-18456789,
           18456881-18456931,18457021-18457092,18457177-18457304,
           18458194-18458275,18458705-18458754,18459043-18459096,
           18459586-18459675,18459903-18459983,18460443-18460538,
           18460960-18461022,18461313-18461402,18461630-18461698,
           18462051-18462291
          Length = 1082

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 332 ETTYTKRLQVMIQFQRNGYDFFNFYLLMA 246
           +  Y  R+ V  +  +  +DFFNFY L+A
Sbjct: 482 DAKYIPRVDVQFKSIKEAHDFFNFYALLA 510


>04_04_0923 +
           29441740-29441980,29442321-29442401,29442630-29442719,
           29443123-29443203,29443721-29443774,29444062-29444111,
           29444542-29444623,29444734-29444838,29445514-29445641,
           29445726-29445797,29445887-29445937,29446029-29446100,
           29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 332 ETTYTKRLQVMIQFQRNGYDFFNFYLLMA 246
           +  Y  R+ +  +  +  +DFFNFY L+A
Sbjct: 454 DAKYIPRVDMQFKSIKEAHDFFNFYALLA 482


>03_05_0226 -
           22115285-22115404,22115477-22116661,22117037-22117861,
           22118029-22118106,22118370-22118420,22118510-22118581,
           22118666-22118667,22119453-22119557,22119668-22119749,
           22120178-22120227,22120514-22120567,22121084-22121164,
           22121567-22121656,22121884-22121964,22122304-22122544
          Length = 1038

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 332 ETTYTKRLQVMIQFQRNGYDFFNFYLLMA 246
           +  Y  R+ +  +  +  +DFFNFY L+A
Sbjct: 388 DAKYIPRVDMQFKSIKEAHDFFNFYALLA 416


>01_05_0420 +
           21969797-21970939,21971307-21971369,21971488-21971616,
           21972241-21972291,21972669-21972809,21972922-21973122,
           21973201-21973419,21973582-21973700,21973772-21973862,
           21975864-21975965,21976291-21976315,21976522-21976592
          Length = 784

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 520 IKVASSPQLRLLYKNAYSAVSCGNYSILCNLVQNGEYDLNAIMFN 654
           I V  S +L+LL    ++ +    Y   C +++ G Y +NA++FN
Sbjct: 676 IAVTPSCKLQLLMWTYFAELGANIY---CQILKIGNYQMNALLFN 717


>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 574 AVSCGNYSILCNLVQNGEYDLNAIMFNCAEIKL 672
           + SC  Y  +  L+++GE ++  ++F  A IKL
Sbjct: 533 SASCNLYDSIKELIESGEIEMKLLLFPSAIIKL 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,541,643
Number of Sequences: 37544
Number of extensions: 350216
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)