Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21j02
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical pr...    31   0.79 
AC025727-6|AAY55898.1|  558|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin ...    29   4.2  
AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin ...    29   4.2  
AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical
           protein W04D2.2a protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 515 ILSRWLARRNLDCCTKTPILQCRAATIVFCAIWCKTANTIL 637
           IL+ WLA +    CT   I+      +V CA+WC +  T L
Sbjct: 84  ILTGWLAMKGAVYCTHPNIIYISG--MVVCALWCSSCMTAL 122


>AC025727-6|AAY55898.1|  558|Caenorhabditis elegans Hypothetical
           protein Y73E7A.9 protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 122 ETFLIWFSLRGHIHLWNRNTKLLRGRIEQD 211
           + ++I  S  GH+++WNR+T  ++G  E D
Sbjct: 450 DQYIIAGSDCGHMYIWNRDTSKIQGIFEAD 479


>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
           protein F38E11.5 protein.
          Length = 1000

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 53  LSLKFNRLFFIKSI*VSII-LYVIETFLIWFSLRGHIHLWNRNTKLL 190
           L L   R    +S  V  + L+ +ET+L+     G++H+WN  T+ L
Sbjct: 3   LRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTL 49


>AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 3 protein.
          Length = 1603

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -3

Query: 192  RSSFVFRFQRCMCPRNENHIRNVSITYKIIET*IDLIKNNRLNFSDNVSRFNSTPE 25
            +S   F  Q       +  +RN+   YK I     LIK  RLN  + VS +  TPE
Sbjct: 1164 KSEITFNAQLEQSTEQKKFLRNIEREYKGIPEYELLIKAARLNQVNVVSEYKLTPE 1219


>AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 4 protein.
          Length = 1603

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -3

Query: 192  RSSFVFRFQRCMCPRNENHIRNVSITYKIIET*IDLIKNNRLNFSDNVSRFNSTPE 25
            +S   F  Q       +  +RN+   YK I     LIK  RLN  + VS +  TPE
Sbjct: 1164 KSEITFNAQLEQSTEQKKFLRNIEREYKGIPEYELLIKAARLNQVNVVSEYKLTPE 1219


>AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical
           protein K02F6.1 protein.
          Length = 783

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 5/25 (20%)
 Frame = +2

Query: 131 LIWFSLRG-----HIHLWNRNTKLL 190
           L+WF ++G     ++++WNRN  LL
Sbjct: 417 LVWFKVKGVEYTEYVYVWNRNNNLL 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,695,688
Number of Sequences: 27780
Number of extensions: 329751
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)