Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21i22
(384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 30 0.11
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 28 0.58
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 27 1.3
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 26 2.3
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 2.3
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 25 5.4
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 25 5.4
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 5.4
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 24 7.1
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 24 7.1
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 24 7.1
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 24 7.1
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 24 7.1
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 24 9.4
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 30.3 bits (65), Expect = 0.11
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 115 IDSLCFLFSKYFNQSLIVDGKGLTFFTEF 201
I+SLC LF+K+ N + + + +TF T+F
Sbjct: 698 INSLCKLFTKFSNFDYLFEDRTVTFLTDF 726
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 27.9 bits (59), Expect = 0.58
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 109 DEID--SLCFLFSKYFNQSLIVDGKGLTF 189
DEID SLC L K+F + V G+GL F
Sbjct: 210 DEIDGISLCNLVHKFFVDACTVPGEGLCF 238
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 26.6 bits (56), Expect = 1.3
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 82 VCFE-AQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTD 258
V FE Q L DE+ + FL + ++ VD T E K + ++ F NQANN D
Sbjct: 132 VSFEQGQALADEL-GVKFLEASA-KTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD 189
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 2.3
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 82 VCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTDN 261
+ F R ++SLCFLF NQ D L F N+ ++++ + +T+N
Sbjct: 341 ITFMGDFKRCVVESLCFLFLLLTNQPRFTD--ELVNFKSSNEMMMNLLFIHVKYSGDTEN 398
Score = 23.8 bits (49), Expect = 9.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 139 SKYFNQSLIVDGKGLTFFTEFNKCIV-SIKSSF---ENQANNTDNIHNVKNIFSIFLRDE 306
+K+ + L + + +TF +F +C+V S+ F NQ TD + N K+ + +
Sbjct: 327 NKFLSNPLKKERQIITFMGDFKRCVVESLCFLFLLLTNQPRFTDELVNFKSSNEMMMNLL 386
Query: 307 FI 312
FI
Sbjct: 387 FI 388
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 2.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 246 QQHRQHTQCKKHFFDIFARRV 308
Q H+ H K HFF IF +++
Sbjct: 339 QHHQCHPLIKTHFFGIFGQKI 359
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 24.6 bits (51), Expect = 5.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 344 CIMVLNWGTCLMNSSRKNIEKMFFTLC 264
CI L WGTC + S KN + C
Sbjct: 308 CICKLRWGTC-VQCSDKNCYAAYHITC 333
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 24.6 bits (51), Expect = 5.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 223 KSSFENQANNTDNIHNVKNIFSIFLRDEFIKQVPQFR 333
K FE +A + HN+K+ F I EF+ +V FR
Sbjct: 883 KEIFE-RATSIMTKHNLKSSFDIEAIKEFVNRVEAFR 918
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 24.6 bits (51), Expect = 5.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 164 IKLWLKYFENKKHNESISSRNN 99
I LWLKY E + N +I+ N
Sbjct: 104 IPLWLKYIECEMKNRNINHARN 125
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 24.2 bits (50), Expect = 7.1
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 118 DSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTDN 261
D + L S F+ V+ + NK K FEN+ N+T N
Sbjct: 150 DQISSLRSGLFSNQREVESLEQLVHEQLNKLNTESKMEFENRKNDTKN 197
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 24.2 bits (50), Expect = 7.1
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = +1
Query: 238 NQANNTDNIHNVKNIFSIFLR 300
++A+NT ++ ++N+FS +R
Sbjct: 477 SRADNTSSLQGIRNVFSYLVR 497
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 24.2 bits (50), Expect = 7.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 149 KYFENKKHNESISSRNNCASKHTFSKRSY 63
KYFEN+ H SS + S ++F + Y
Sbjct: 232 KYFENQLHLVKASSSDVSNSSNSFPENRY 260
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 24.2 bits (50), Expect = 7.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 176 LPSTIKLWLKYFENKKHNESISS 108
LP+T+ W+ Y E+KK+ + S+
Sbjct: 147 LPTTVSWWVCYEESKKYLQKQSN 169
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 24.2 bits (50), Expect = 7.1
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 130 NTTNRFHLVTIALQNTRFRSGRTC*TLNCIVIC-KRTWXIQ 11
N T+R+H+ +ALQ+ +NC ++C K W ++
Sbjct: 759 NNTSRYHVARMALQHALH---NPTVAVNCNMLCAKYAWKLE 796
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 23.8 bits (49), Expect = 9.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 224 FMETIHLLNSVKKVRPLPSTIKLWLKYFENKKH 126
F++ + + N+V V PLP I L ++Y + KH
Sbjct: 338 FVQNLFVSNTVP-VPPLPPCIPLLVQYTQLPKH 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,712
Number of Sequences: 5004
Number of extensions: 30886
Number of successful extensions: 109
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -