Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21i22
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1162 - 11002193-11002274,11002628-11002662,11004285-110044...    31   0.31 
03_06_0118 + 31795050-31796404,31796513-31797083                       27   3.8  
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    27   3.8  
12_02_0672 - 21726416-21726664,21727654-21727744,21727914-217279...    27   5.1  
02_05_0409 - 28723534-28724646                                         27   5.1  
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591...    26   8.9  

>07_01_1162 -
           11002193-11002274,11002628-11002662,11004285-11004419,
           11004521-11005048
          Length = 259

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 16/65 (24%), Positives = 34/65 (52%)
 Frame = +1

Query: 157 SLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTDNIHNVKNIFSIFLRDEFIKQVPQFRT 336
           +L+ DG  L    +F KC+  +++ +    +  D +  +KN  S+F +D F  ++  + T
Sbjct: 194 ALVSDGPNLDAVVDFLKCVPCLETLYIT--SRPDKV--IKNARSVFAKDIFYLKIRYYAT 249

Query: 337 IMQYL 351
           +  Y+
Sbjct: 250 MSDYV 254


>03_06_0118 + 31795050-31796404,31796513-31797083
          Length = 641

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 166 VDGKGLTFFTEFNKCIVSIKSSFENQANNTDNIHNVKNIFSIFL 297
           + G G+ FF   N    ++ S +    N+T+N +   +IF + L
Sbjct: 105 LSGHGIVFFVGKNNFTAALPSQYLGLLNSTNNGNTTNHIFGVEL 148


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 71  ASKTCVLKRNCYEMKSIRCVFYFQNISTKA*SWTVKVLLF 190
           A K+  +   C E+ +  C+  F  + +KA SW V+ LL+
Sbjct: 27  AIKSSEVALKCSELDTTNCLGPFLTLGSKAGSWCVRHLLW 66


>12_02_0672 -
           21726416-21726664,21727654-21727744,21727914-21727981,
           21728684-21728809,21728893-21729113,21729876-21729903
          Length = 260

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = -2

Query: 284 KMFFTLCMLSVLLA*FSKLLFMETIHLLNSVKKVRPLPSTIKLWLKYFENKKHNESISSR 105
           K F T    +++L   SK +FM++  ++++   +RP PS   + ++ + +++   +  S 
Sbjct: 140 KNFITAFFRNLMLVTTSKTIFMDSSDIISANSLLRP-PS---MRVRDYRSEQQQGAARST 195

Query: 104 NNCASKHTF 78
           + CA   TF
Sbjct: 196 SCCAMNRTF 204


>02_05_0409 - 28723534-28724646
          Length = 370

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 336 GPKLGHLFDELVAQK 292
           GPKLGH+F+ LV+ K
Sbjct: 255 GPKLGHMFETLVSVK 269


>04_04_1445 -
           33658355-33658417,33658536-33658669,33659056-33659116,
           33659197-33659356,33660032-33660081,33662237-33662290,
           33662630-33662704,33662821-33662949,33663065-33663152,
           33663266-33663372,33663513-33663561,33663657-33663760,
           33663941-33663980,33664409-33664659,33664674-33664686,
           33665846-33666355,33666437-33667657,33667973-33668221,
           33668305-33668531
          Length = 1194

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 221 METIHLLNSVKKVRPLPSTIKLWLKYFENKKHNESISSRNNCASK-HTFSKRSYVLNLKL 45
           ++T+H L      + LP   K+W    +     + I+S+N    K H  S+  + L++ +
Sbjct: 206 VDTLHNLQQDVVRKVLPLLHKIWKNVDKLGSSTDCINSKNQLQRKEHEISEAIFRLSMNI 265

Query: 44  YC 39
            C
Sbjct: 266 AC 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,308,612
Number of Sequences: 37544
Number of extensions: 157931
Number of successful extensions: 412
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)