Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21i18
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.7  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   4.7  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   6.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   6.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   8.2  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   8.2  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   8.2  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   8.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 438 RSPKKTASATIVYWN 482
           R PKK   AT+VY++
Sbjct: 52  RPPKKDGQATVVYFH 66


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 240 VCISDRFFAFPHNLVEP 290
           +C+SD  +  PHN   P
Sbjct: 296 LCMSDLHWQLPHNSTNP 312


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 260 FCVSSQFGGTAKRRRQQINR 319
           FC     GG++K+R+  + R
Sbjct: 94  FCAEIAHGGSSKKRKSIVER 113


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 76  ISIVVNNGRVQRDLFYHYNYV 138
           IS   NN    + L+Y+ NY+
Sbjct: 93  ISNYNNNNNYNKKLYYNINYI 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 76  ISIVVNNGRVQRDLFYHYNYV 138
           IS   NN    + L+Y+ NY+
Sbjct: 331 ISNYNNNNNYNKKLYYNINYI 351


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 91  NNGRVQRDLFYHYNYV 138
           NN    + L+Y+ NY+
Sbjct: 100 NNNNYNKKLYYNINYI 115


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 91  NNGRVQRDLFYHYNYV 138
           NN    + L+Y+ NY+
Sbjct: 100 NNNNYNKKLYYNINYI 115


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 91  NNGRVQRDLFYHYNYV 138
           NN    + L+Y+ NY+
Sbjct: 100 NNNNYNKKLYYNINYI 115


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 91  NNGRVQRDLFYHYNYV 138
           NN    + L+Y+ NY+
Sbjct: 100 NNNNYNKKLYYNINYI 115


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 333 YVPTDDDRLYIDKKQ 377
           Y P +D ++Y +KK+
Sbjct: 795 YSPVEDGKIYSEKKE 809


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 101 RPLFTTIEMQKYIAYINTMIRKIADRKY 18
           RP+F+T++  +Y    +  IR+  +  Y
Sbjct: 120 RPVFSTLQRAEYPTNRSLFIREQTEEMY 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,954
Number of Sequences: 438
Number of extensions: 3048
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)