Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21i03
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 29 0.61
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 29 0.61
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 28 1.4
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 27 3.2
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 4.3
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 26 4.3
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 4.3
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 26 5.6
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 26 5.6
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 7.5
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 25 7.5
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 25 9.9
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 25 9.9
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 25 9.9
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 29.1 bits (62), Expect = 0.61
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 31 SYTPEQNGLCERMNRTIVQNRIVKTGLNNRTPYEVWTGTKPNL 159
S+ P ++G +++ RT+ I G+ VW G+K L
Sbjct: 67 SFLPPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTL 109
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 29.1 bits (62), Expect = 0.61
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 331 IFIEENNFDEQKVIEIKVNDLSNKSLSSSVGDLPNTSREDSFTSAE 468
++I+EN+FD+ ++E ND+ K + S + +T S S+E
Sbjct: 132 VYIDENDFDDDLLLE---NDIDQKPIPWSSSPIEHTKLTKSMLSSE 174
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 181 SAVMKHIPKEKRQKWDKKSEQCILI 255
+A++KH PK K KK ++CIL+
Sbjct: 178 AAMLKHKPKVKPSSGTKKKKRCILL 202
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 3.2
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 3/133 (2%)
Frame = +1
Query: 1 NSG-INHQKANSYTPEQNGLCERMNRTIVQNRIVKTGLNNRTPY--EVWTGTKPNLSHLR 171
N+G + H YT + L R ++ + + I ++ + Y +WTG+ NLSH
Sbjct: 33 NTGLVLHGPRRWYTTDNGFLLHRDSKVSLADYIHESTFDPSKGYYSRLWTGSTNNLSH-- 90
Query: 172 ILGSAVMKHIPKEKRQKWDKKSEQCILIGYPEDVKGYRIYNPAAQSITTSRDVIFIEENN 351
H+ +++ K K+ + L G P K IY + S + +
Sbjct: 91 ------SVHVLRKEGHKCSKEFDP-FLHGIPIPQKALNIYEKQRSLFSESISNYLVLQYK 143
Query: 352 FDEQKVIEIKVND 390
V ++K+ D
Sbjct: 144 LRYFPVFDLKIYD 156
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 343 ENNFDEQKVIEIKVNDLSNKSLSSSVGDLPNTSREDSFTSAE 468
+NN EQ + K N + + S G+ PN+ EDS S +
Sbjct: 248 QNNKSEQTIKPSKQNKQKEEKKTISQGNKPNSRDEDSELSID 289
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 172 ILGSAVMKHIPKEKRQKWDKKSEQCILIGYPEDVKGYRIYNPAAQSITTSRDVI 333
+L +A I + KR K + I+ Y + G NPA + TS D++
Sbjct: 439 VLANACGPCIGQWKRTDVKKGEKNSIVTSYNRNFTGRNDANPATHAFVTSPDIV 492
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 205 KEKRQKWDKKSEQCILIGYPEDVKGYRIYNP 297
K+K+ + ++K + CIL G E V +RI P
Sbjct: 307 KQKKDEEEEKYKWCILDGRKEKVGNFRIEPP 337
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 622 LLHSSVHIYPYLSGCFLCLFGIVLRKRHF 536
L H+ H++ Y G L +F + R HF
Sbjct: 98 LKHNVKHVFGYPGGAILPVFDAIYRSPHF 126
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 301 AQSITTSRDVIFIEENNFDEQKVIEIKVNDLSNKSLSSSVGDL 429
+ ++ T RD+ + + + F Q V++ + D+SN ++ S DL
Sbjct: 87 SDTVITKRDIYYRDVDLFKRQTVVDELLGDISN-TIGCSRSDL 128
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 358 EQKVIEIKVNDLSNKSLSSSVGDLPNTSRED 450
++ VIE + + LSNKS +SS + P + ++D
Sbjct: 620 QEAVIEKRNSVLSNKSCASSESNTPASVKQD 650
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 657 VPLLM-SIHL*PDCYILLYTYIHI 589
VP+L+ S+ + PD +LL TY HI
Sbjct: 633 VPVLLDSVSIKPDVILLLDTYFHI 656
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = -3
Query: 448 PLYWCSANLPLKMTMIYYLNHLLLFQLPSVHQSY 347
PL WC L + +Y L LFQ H Y
Sbjct: 200 PLMWCYFTHDLHLVTMYIWITLRLFQAVDSHAGY 233
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 280 YRIYNPAAQSITTSRDVIFIEENNFDEQKVIEIKVNDL 393
+ IY P + +R+V +IEE Q++ + + N L
Sbjct: 56 FEIYQPKKIRVLKTREVQYIEEEKKTNQELNDCRGNQL 93
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +1
Query: 307 SITTSRDVIFIEENNFDEQKVIEIKVNDLSNKSLSSSVGDLPNTSREDSFTSAE 468
S+ + +I + ++FD V + ND+ + +S G +PN S E
Sbjct: 448 SLNAPKSIIVSQSDSFDTSNVTQDAPNDVEKEPIS---GQMPNNLSVQSLKQLE 498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,250
Number of Sequences: 5004
Number of extensions: 58376
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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