Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21h21
         (128 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   1.0  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   5.6  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   7.3  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    22   9.7  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    22   9.7  

>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -1

Query: 125 FFCVCVFYLSHKMDVWQKSQPILVFFSYITRFNLILKLIIT 3
           F C+  F + H + VW    P L++ +       + K +I+
Sbjct: 711 FLCISCFIMRHHLFVWSVFSPKLLYNASWASMYFLAKCLIS 751


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = -1

Query: 128 FFFCVCVFY-----LSHKMDVWQKSQPILV-FFSYITR 33
           FF CVCVF      LSH + +     P+L+  FS ++R
Sbjct: 159 FFLCVCVFLSFLFSLSHLLSLAILFLPLLLRVFSTLSR 196


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -1

Query: 65  PILVFFSYITRF 30
           P+L+ FSY+TR+
Sbjct: 332 PLLLIFSYLTRY 343


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 110 VFYLSHKMDVWQKSQPILVF 51
           VF L HKMD+ Q+    LVF
Sbjct: 117 VFCLIHKMDLVQEDLRDLVF 136


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 59  ILVVIFARRPFYVINKTHTHK 121
           ILVV F+     +I   HTHK
Sbjct: 836 ILVVFFSIEFLRIIEALHTHK 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,978
Number of Sequences: 5004
Number of extensions: 5960
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)