Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21h07
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 0.99
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 27 2.3
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 4.0
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 4.0
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 25 7.0
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 25 7.0
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 9.2
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 25 9.2
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|... 25 9.2
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.9 bits (59), Expect = 0.99
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 336 LITKEGVIQLIMKSKLPYAVELQAWLLEEVIPQVL-CTGKYAPAVKMDTNYGVI 494
L+ K+GV+ L+ K KLP++V + ++ + L K+ +D+ Y V+
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMIIAGGRKEFLELLDKFEMLDMLDSGYPVV 595
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 26.6 bits (56), Expect = 2.3
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 385 GSLLFIISWITPSLVMSTVCGCKYSGSPCFATLFGAEGGSLAPDSLYVVLYFLSTL-TIT 209
GS+ + I PS STV YSGS F T G++ P ++ V+L +T+ T T
Sbjct: 924 GSVSGNVEVIEPS--GSTVTSTIYSGSESFTTTLAVGSGTI-PGTVEVILPAPTTIYTGT 980
Query: 208 ACLQFTY 188
TY
Sbjct: 981 VATTITY 987
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 4.0
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 189 YVNCKQAVIVNVDKKYKTTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKEGVIQLI 368
+VN K+ V +K+ K Y E + S + V K + L P + TK G+ Q+I
Sbjct: 644 HVNKKRKVSQKREKQKKFLYDEPTFKKEASPHSDVLKNLHFVVLPPTELHETKAGLQQII 703
Query: 369 MKS 377
+++
Sbjct: 704 IEN 706
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 377 ALHN*LDNTLLGDEHCMRLQIQRIALLCH 291
ALH+ N +L DE + IQ IALL H
Sbjct: 460 ALHDSNTNGILADEMGLGKTIQTIALLAH 488
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 102 EDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQ 206
E +FTL+ ++E G + + DIA +L++++ +Q
Sbjct: 386 ETSFTLQALVESGLYEKEAFKPDIAKALEFLDRQQ 420
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 361 WITPSLVMSTVCGCKYSGSP 302
WI P+L +S +C K+ P
Sbjct: 90 WIVPNLELSPLCSSKFKPGP 109
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -3
Query: 316 YSGSPCFATLFGAEGGSLAPDSLYVVLYFLSTLTITACLQFT 191
Y+GS T G P ++YV + +T+T T + ++
Sbjct: 638 YTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYS 679
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/65 (20%), Positives = 28/65 (43%)
Frame = +3
Query: 186 KYVNCKQAVIVNVDKKYKTTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKEGVIQL 365
KY CK + +Y + +S +P +AP+ + + P + L+ + +L
Sbjct: 172 KYAGCKIDISTFEQSRYPRVFVDSQLPVPKAAPSPIEEWYPPGHGDIFDALVHSGTIERL 231
Query: 366 IMKSK 380
+ + K
Sbjct: 232 LAQGK 236
>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
Pef1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 288
Score = 24.6 bits (51), Expect = 9.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 228 KKYKTTYSESGARLPPSAPNSVAKQ 302
KKY TY GA LPPS + +Q
Sbjct: 86 KKYMDTYGNQGA-LPPSQVKNFTQQ 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,006
Number of Sequences: 5004
Number of extensions: 33165
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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