Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21h06
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0633 - 30492742-30492987,30493082-30494194                       29   2.2  
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715...    29   3.8  

>02_05_0633 - 30492742-30492987,30493082-30494194
          Length = 452

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 278 CNEKKAASAVSWRLAKRSCCICVRRRPQRRC 370
           C+ +KAA AV  + A R+C  C+RRR +  C
Sbjct: 3   CSSEKAAGAVGGKAA-RACDSCLRRRARWYC 32


>06_03_0151 +
           17270688-17270698,17271149-17271281,17271548-17271589,
           17271706-17271815,17271957-17272035,17272114-17272287,
           17272386-17272466,17272761-17272988,17273067-17273402,
           17273501-17273586,17273642-17273783,17274596-17274687,
           17274770-17274904,17275142-17275304,17275393-17275482,
           17275568-17275753,17276109-17276141,17276700-17276762,
           17276839-17276901,17276983-17277042,17277258-17277410,
           17277530-17277613,17278434-17278610,17278685-17278791,
           17278858-17279071,17279158-17279261,17279926-17280061,
           17280191-17280316,17280682-17280792,17280968-17281066,
           17281367-17281633,17281707-17281822,17281853-17282084,
           17282597-17282664,17282682-17282807,17282980-17283040
          Length = 1495

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 401 LLFISKILQNV-LRTTNATSLLILLNSNRSKPYL*KKYTNTWCLKTRAFLTNT 556
           + FIS +L+N+ L T +   +L  L        + K+  N W L  +AFL  T
Sbjct: 823 MYFISLVLENLALSTDDNEDILYCLKGWNQALEMAKQKNNQWALYAKAFLDRT 875


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,102,921
Number of Sequences: 37544
Number of extensions: 310977
Number of successful extensions: 802
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)