Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21h04
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 107 2e-24
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 52 8e-08
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 51 2e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 49 6e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 47 3e-06
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 45 1e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 7e-05
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 41 2e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 39 8e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 38 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 37 0.003
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 37 0.003
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 37 0.003
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.004
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 36 0.004
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 35 0.014
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 34 0.018
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.055
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 32 0.073
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.13
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 31 0.13
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.17
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.22
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.29
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 30 0.39
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.51
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.51
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 29 0.68
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 29 0.89
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 1.6
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 1.6
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 2.7
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 4.8
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 4.8
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 6.3
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 25 8.3
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 8.3
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 107 bits (256), Expect = 2e-24
Identities = 56/108 (51%), Positives = 68/108 (62%)
Frame = +2
Query: 401 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 580
+K RV EME EA KL+ MQ ++D + T L +K D +SVYVGNVDY
Sbjct: 17 MKERVAEMEAEAAKLRAMQEQLDNE---------TEALR---NDKESIDAQSVYVGNVDY 64
Query: 581 GATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 724
T EEL+ HF CGS+NRVTILC+K+ GHPKGFAYIEF + V A
Sbjct: 65 SVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 52.0 bits (119), Expect = 8e-08
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +2
Query: 530 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 709
+++ + +V+VGN+ + AT ++L F GCG I + + + G KGF Y+ F D D
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 710 SVQ 718
S +
Sbjct: 419 SAK 421
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/86 (19%), Positives = 38/86 (44%)
Frame = +2
Query: 467 DKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTI 646
D++ P P ++ + + +V+VG + + + L Q F G+I +
Sbjct: 235 DEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARV 294
Query: 647 LCNKYDGHPKGFAYIEFGDKDSVQTA 724
+ + G KG+ Y++F ++ + A
Sbjct: 295 IMDGQSGRSKGYGYVDFETPEAAKAA 320
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +2
Query: 488 SPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 667
S P T SI+ + + ++VGN+D+ T +L++HF G I RV ++ + G
Sbjct: 207 SKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTG 266
Query: 668 HPKGFAYIEFGDKDSVQTA 724
KGF +++F D D+ A
Sbjct: 267 KCKGFGFVDFPDIDTCMKA 285
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 49.2 bits (112), Expect = 6e-07
Identities = 33/103 (32%), Positives = 50/103 (48%)
Frame = +2
Query: 416 REMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAE 595
R + + E L+ +++ S P +S L+ EE E D R+V+V + T+
Sbjct: 200 RAHDYDYEDLRDDDRSHERKRSRSRPRERSSKLS---EE--ERDRRTVFVSQLANRLTSR 254
Query: 596 ELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 724
EL F G + I+ +K G KG AY+EF +DSVQ A
Sbjct: 255 ELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = +2
Query: 551 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 724
R V+VGN+ + A E L ++F CGSI+ V I+ + KGFAYI+F D V A
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKA 327
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 45.2 bits (102), Expect = 1e-05
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +2
Query: 425 EEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSV--YVGNVDYGATAEE 598
+E EK + DK S+ +PP T S +K + ++R V +VGN+ ++ E
Sbjct: 52 DELPEKQLAQSNDKDKH-SVSNPPHKTLK---SKRQKGKNNDRKVILFVGNLPKDSSVET 107
Query: 599 LEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 697
L+ HF G + V I +K G KG+A++EF
Sbjct: 108 LQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +2
Query: 515 NMSIEEK---IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFA 685
N+S +E+ + ++ + +++ N+ Y ++L+ F G + +V + +K +PKGFA
Sbjct: 308 NVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFA 367
Query: 686 YIEFGDKDSVQTA 724
YI+F D D A
Sbjct: 368 YIDFHDADDAVRA 380
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/70 (20%), Positives = 33/70 (47%)
Frame = +2
Query: 488 SPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 667
S G+ + + ++ + + + N+ + AT ++++ G + V + K+D
Sbjct: 700 SHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVP-KKFDR 758
Query: 668 HPKGFAYIEF 697
+GFA+ EF
Sbjct: 759 SARGFAFAEF 768
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Frame = +2
Query: 530 EKIEA-DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHP-----KGFAYI 691
E IE+ D ++YV N+++ EE ++ F I P GF ++
Sbjct: 611 EDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFV 670
Query: 692 EFGDKDSVQTA 724
EF DK S A
Sbjct: 671 EFKDKASAVAA 681
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 563 VGNVDYGATAEELEQHFHGCGSINRVTI 646
V N YG +AEEL F G + R+ I
Sbjct: 510 VKNFPYGTSAEELTSLFSPFGELGRILI 537
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 557 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE-FGDKDSVQT 721
VYVGN+ + T E++ F CG I R+ + +++ P GF ++E F ++D++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDS 89
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 38.7 bits (86), Expect = 8e-04
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 545 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 709
D+ ++ V N+ EEL F G I RV + +K G KGFA++ + D+D
Sbjct: 200 DSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRD 254
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +2
Query: 521 SIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG 700
+I + + ++VG V T EE F+ G + T++ +K G P+GF ++ +
Sbjct: 237 AIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE 296
Query: 701 DKDSVQ 718
++ +V+
Sbjct: 297 NESAVE 302
Score = 31.9 bits (69), Expect = 0.096
Identities = 16/90 (17%), Positives = 38/90 (42%)
Frame = +2
Query: 428 EEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQ 607
E+ E K ++ GS ++ N ++ +++G +++ T + L
Sbjct: 122 EDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 608 HFHGCGSINRVTILCNKYDGHPKGFAYIEF 697
+F G + T++ + G +GF ++ F
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 557 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 724
VYVGN+ Y E++ F G + ++ + G PKG+ + E+ D + +A
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +2
Query: 557 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 724
V+VGN+ Y + +++ + F+ G + ++ + G KG+ + EF D ++ A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMA 64
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +2
Query: 542 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQT 721
+D+ +Y+GN+D+ +++ F G + ++ +K G KGFA++++ D+ S
Sbjct: 28 SDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVL 87
Query: 722 A 724
A
Sbjct: 88 A 88
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/65 (26%), Positives = 36/65 (55%)
Frame = +2
Query: 530 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 709
E ++A+ +VY+ N+D T +E F G I ++++ ++ D P+GF ++ + + +
Sbjct: 254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHE 312
Query: 710 SVQTA 724
Q A
Sbjct: 313 CAQKA 317
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 530 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 709
+K R VYVGN+ Y EL++ G++ IL N +G KG A IE+ +
Sbjct: 59 QKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYSTAE 117
Query: 710 SVQTA 724
+TA
Sbjct: 118 EARTA 122
Score = 29.5 bits (63), Expect = 0.51
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 557 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 724
+YVGN+ + + L F GS+ R I + G KGF ++F +++ ++
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARI-AYEPTGRSKGFGVVQFENENDAASS 336
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 557 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 724
V+V N+ T+E+L HF G + + + N Y G G I F + S+ A
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVA 151
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 34.7 bits (76), Expect = 0.014
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +2
Query: 500 LTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKG 679
++ PL + + R +YV N+D+ +++E F G + V I +++ H KG
Sbjct: 740 ISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRI-PKRFNQH-KG 797
Query: 680 FAYIEFGDKDSVQTA 724
F Y+ + A
Sbjct: 798 FGYVVMTTNQDAENA 812
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 34.3 bits (75), Expect = 0.018
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Frame = +2
Query: 548 NRSVYVGNVDYGATAEELEQHFHGCG----SINRVTILCNKY---DGHPKGFAYIEFGDK 706
N++VY+ + T +E+E+ F CG +I+ T Y DG PKG A I F
Sbjct: 109 NKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTPKGDALIVFFRS 168
Query: 707 DSVQTA 724
+SV+ A
Sbjct: 169 ESVELA 174
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.055
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 518 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRV 640
+S+ + E ++ ++YVGN+D + EE+ +HF G + +
Sbjct: 6 LSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 545 DNRSVYVGNVDYGATA--EELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 697
D ++YV N+D +LE F GSI + C G KG+ ++ F
Sbjct: 380 DPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 32.3 bits (70), Expect = 0.073
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 167 QVIQFITTIRTVFKLQSVFELHKITI*CKIFT 72
+V F T+ TVFK++ VF LH++ + IFT
Sbjct: 293 KVANFWCTLNTVFKIREVFTLHQLQVISLIFT 324
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 557 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 724
+ V V AT E++E F G + + + ++ G+ KG+A IE+ + Q A
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKA 67
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/74 (21%), Positives = 36/74 (48%)
Frame = +2
Query: 503 TSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGF 682
TS S +E + ++++G ++ T ++Q ++ G +V ++ N+Y G G+
Sbjct: 78 TSNYGSSRDENVY-QKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGY 136
Query: 683 AYIEFGDKDSVQTA 724
++EF +A
Sbjct: 137 CFVEFASPHEASSA 150
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.1 bits (67), Expect = 0.17
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 539 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGH----PKGFAYIEFGDK 706
+AD+ V+VG + E+ F G++ +VTI + P G A++ F ++
Sbjct: 40 QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQ 99
Query: 707 DSVQTA 724
+ V A
Sbjct: 100 EDVDKA 105
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.7 bits (66), Expect = 0.22
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +2
Query: 482 MGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKY 661
MG PP SP+ + + I NR+VY+GN+ T EE+ G G ++ + L K+
Sbjct: 303 MGYPP--PSPV-LQKPDLIMTGNRTVYIGNIHADTTIEEICNAVRG-GLLHNIRYLQEKH 358
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 548 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNK 658
+R++Y+GN D T E L++ F G I V K
Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREK 449
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 506 SPLNMSIEEKIE--ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNK 658
SPL SI+ A +R+V++GN+ +E+E+ F G I + IL K
Sbjct: 282 SPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKK 334
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 503 TSPLNMSIEEKI-EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 667
+ PL +E+ I +R+VY ++ T EELE G I + L N+ G
Sbjct: 483 SGPLPRVLEDSILMGASRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSG 538
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.9 bits (64), Expect = 0.39
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +2
Query: 554 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 724
+ +VGN+ + T +L F G G + + ++ + +GF Y+EF D++ A
Sbjct: 95 TAHVGNLSFDLTENDLGDFF-GEG-VTSIRLVIDPLTERSRGFGYVEFETADTLSAA 149
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.5 bits (63), Expect = 0.51
Identities = 23/82 (28%), Positives = 36/82 (43%)
Frame = +2
Query: 479 SMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNK 658
S S +S L+ S EE + R++ V N+ T E + + F G I+ + + K
Sbjct: 79 SFSSNRSYSSSLSRSPEEPL----RTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYK 134
Query: 659 YDGHPKGFAYIEFGDKDSVQTA 724
KG+ YIE+ D A
Sbjct: 135 KSELNKGYCYIEYVYHDQAANA 156
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 557 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 709
++VGN+ E L Q F S+ + ++ ++ +G +GF ++ F D D
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSD 81
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 29.1 bits (62), Expect = 0.68
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +2
Query: 551 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYD--GHPKGFAYIEF-GDKDSVQ 718
+ +YVG + + +LE F GS++ + I+ NK G + FAY+ F D+D Q
Sbjct: 5 KRIYVGGLSSSIESSDLESRFSRFGSVSNLEII-NKSTPVGTIQRFAYLNFRTDEDKWQ 62
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 28.7 bits (61), Expect = 0.89
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 422 MEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSV 559
ME+ + K+ +TEV ++ S GL LN+ + ADN V
Sbjct: 65 MEKRKARFKKKETEVHEKPSQLPDSGLNYGLNIRVASSSAADNEIV 110
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/56 (21%), Positives = 25/56 (44%)
Frame = +2
Query: 557 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 724
+Y+ N+ +++ + G + ++ N DG KGF + EF + + A
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVA 367
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 554 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYD-----GHPKGFAYIEFGDKDSVQ 718
S+YVGN+ + +L + F G+ ++ +L K + P FA+I F +K S
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 719 TA 724
A
Sbjct: 81 NA 82
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +2
Query: 518 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 697
MSI E D ++Y+GN+D T L + G + + I ++ GF + EF
Sbjct: 1 MSIREDRNQD-ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
Query: 698 GDKDSVQTA 724
+ V+ A
Sbjct: 60 LHEQDVEYA 68
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +2
Query: 554 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 724
+++VGN+D L F G + + + +G KG+ ++ + DS +TA
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY---DSFETA 153
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 179 DFIVDLVTVSEK*SDLEIYNS*FRRSVEMAENDDFLDSI----DNNHLEGTNGSMNMTDN 346
DF + + + D+++ S +++ + + DDF + D++ LEG NG M +T
Sbjct: 398 DFSAYIASSESEDEDVDVIRSRYQKLLS-GDADDFQANSNPFEDDDKLEGANGEMEVTFT 456
Query: 347 SXXXXXXXXXXXXXXXXXIKARVREMEEEAEKLKQMQ 457
S I+ R+ E ++ K+++
Sbjct: 457 SGFDVDNNANSSEKDETTIEKYKRKAAERKQRRKELR 493
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 404 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYG 583
K + RE ++E EKL++ Q + K+ S G +S ++ ++ A+N S G G
Sbjct: 181 KEKERE-KKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDSSAKGKQAAG 239
Query: 584 A 586
+
Sbjct: 240 S 240
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 437 EKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQ 607
EK+K+++ E +QMS+ S L S L ++ E I + S+ + N +L+Q
Sbjct: 279 EKIKKIEDERMRQMSVSSDRTLDSQL-QTVNENITRISTSIELKNTALEEEHGDLQQ 334
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +2
Query: 413 VREMEEEAEKLKQMQTEVDKQMSMGSPP 496
++++EEE EKL+ ++ +++++S P
Sbjct: 373 IKDLEEEEEKLRSVEGSLNEELSEEEKP 400
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 335 YSLSR*SLPNDCCQSSLKNHHFLPFP 258
Y R +P D + SL++ HFLPFP
Sbjct: 777 YQHLRNYMPIDKNEISLRSVHFLPFP 802
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,169
Number of Sequences: 5004
Number of extensions: 52297
Number of successful extensions: 188
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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