Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21g24
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    28   1.2  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    28   1.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   2.7  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    27   2.7  
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    27   2.7  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   6.2  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.2  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   8.2  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    25   8.2  

>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 289 ALVIASVCV-QFDATRIIIRNLSLLFLTSPLPRNILPVYYYYFVLPRVL 432
           ++ I   CV    +T+ ++R+LSL+       RNIL +YYY  V PR +
Sbjct: 839 SMAIQMGCVLDLSSTKSLLRSLSLI--EDDTVRNILQLYYYK-VTPRAV 884


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 107 HHTLRVNGEDV*LYLIVSIVMFQREKHKATSIRRAIRFFEKNLRCY 244
           HH   V G  + L   V++V F   KH   S +RA R       C+
Sbjct: 74  HHKPAVVGASITLMASVALVDFDPVKHAGVSSKRAYRVVLAGFLCF 119


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 361 FLTSPLPRNILPVYYYYFVLPRVL 432
           FL+ PLPR +  V YY F+  ++L
Sbjct: 834 FLSKPLPRLLNQVNYYQFIRNKLL 857


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +3

Query: 462 SEDLNRVNVSINHTSSGNL--TAFS 530
           +ED N++NV   H  +GNL  TAFS
Sbjct: 329 TEDCNKINVHPRHPYAGNLVFTAFS 353


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 67  SDGGRHIGSTRANPSHFTSQWRGRLTIFNR 156
           +  GRH+    A PS F ++W   LT+F++
Sbjct: 298 TQSGRHLAEIGAEPSAFATRW--YLTVFHQ 325


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 335 LLFVIYRCYF*PRRFHETYSPCTTTTLYY 421
           L  ++Y CY    +FH T   C +T L++
Sbjct: 200 LAALLYGCYSVMVKFHITEESCVSTRLFF 228


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -3

Query: 286 HLRMNVMRMNVCQ--NVASQIFFKKPYRTSN*RRFVFFSLKHDDGYD 152
           HL +       C+  N+  Q++F    R  + +  + F+LKH D  D
Sbjct: 256 HLLLQSSENQACKFFNIGPQVYFDPRERLLHVKELLKFALKHIDSND 302


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 247  FGTRSSALHSYAGDALVIASVCVQFDATRIIIRNLSLLFLTSPLPR 384
            F   S   + YA    ++A  C  +DA ++ IRNL  + L   + R
Sbjct: 1047 FALLSKHRYFYASAFFLLADSC--YDAAKVCIRNLKSISLAIAMTR 1090


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 295 VIASVCVQFDATRIIIRNLSLLFLTSPLPRNILPVY 402
           +I ++  +FD+  I I+ LSLL L +   R+I+P Y
Sbjct: 241 LIRNIFEKFDSPYITIKKLSLLTLLAVF-RDIIPGY 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,071
Number of Sequences: 5004
Number of extensions: 49385
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)