Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21g24
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0279 + 16211180-16211410,16211516-16211659,16212466-162125...    29   2.1  
12_01_1109 - 11726818-11727719,11728225-11728394,11730407-117304...    29   3.6  

>07_03_0279 +
           16211180-16211410,16211516-16211659,16212466-16212597,
           16213478-16213591
          Length = 206

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 357 VISNLAASTKHTPRVLLLLCTTPCATHYY*TLH 455
           V+S+ A S+  +PRV   L  +P A + Y TLH
Sbjct: 52  VLSSAAVSSSASPRVSCTLTVSPAAVNGYNTLH 84


>12_01_1109 -
           11726818-11727719,11728225-11728394,11730407-11730483,
           11730559-11730645,11730730-11730816,11731887-11731991,
           11732133-11732168,11733636-11733754,11733862-11734067,
           11735854-11735906,11735986-11736153,11736507-11736591,
           11737845-11738023,11738939-11739070,11739209-11739295,
           11739920-11739972,11740820-11740892,11741791-11742442,
           11743165-11743229
          Length = 1111

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 100 ANPSHFTSQWRGRLTIFNRIHRHVSK 177
           A  S F  QW+G  T+F R + H++K
Sbjct: 183 AESSKFGGQWQGSKTVFMRSNEHLNK 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,461,903
Number of Sequences: 37544
Number of extensions: 302097
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)