Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21g24
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.0  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 380 HETYSPCTTTTLYYPVCYSLLL 445
           H    PC++   Y+ +C  LLL
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLL 99


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 380 HETYSPCTTTTLYYPVCYSLLL 445
           H    PC++   Y+ +C  LLL
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLL 99


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 380 HETYSPCTTTTLYYPVCYSLLL 445
           H    PC++   Y+ +C  LLL
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLL 99


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 391 VCFVEAARLEITTINY 344
           +CF+ A+ LE   +NY
Sbjct: 371 MCFIYASLLEFVCVNY 386


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 391 VCFVEAARLEITTINY 344
           +CF+ A+ LE   +NY
Sbjct: 340 MCFIYASLLEFVCVNY 355


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 391 VCFVEAARLEITTINY 344
           +CF+ A+ LE   +NY
Sbjct: 391 MCFIYASLLEFVCVNY 406


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 391 VCFVEAARLEITTINY 344
           +CF+ A+ LE   +NY
Sbjct: 340 MCFIYASLLEFVCVNY 355


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 353 DKLRIIILVASNWTQTDA-MTKASPAYECNADERV 252
           +KLRI I+ + NW  T A +   + A   N ++RV
Sbjct: 3   EKLRICIVGSGNWGSTIAKIIGINAANFSNFEDRV 37


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 389 YSPCTTTTLYY 421
           YSP  +T+LYY
Sbjct: 267 YSPVASTSLYY 277


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 389 YSPCTTTTLYY 421
           YSP  +T+LYY
Sbjct: 267 YSPVASTSLYY 277


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 389 YSPCTTTTLYY 421
           YSP  +T+LYY
Sbjct: 267 YSPVASTSLYY 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,653
Number of Sequences: 438
Number of extensions: 3480
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)