Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21g21
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    27   0.65 
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   0.86 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   3.5  
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    25   4.6  
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch...    24   8.0  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    24   8.0  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 27.5 bits (58), Expect = 0.65
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 242 GPRILPGAGPDEPTVLFDIVLL 177
           GPR  PG  P   T+LFD+ LL
Sbjct: 84  GPRGFPGLIPPNSTLLFDVELL 105


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 0.86
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 328 FYHFPSVE--HILTESYFQHTMYKYVSEVYQDHVF 230
           F+  P  E  H L  SYFQH  + + + VY D ++
Sbjct: 154 FHDIPKKEVAHELVTSYFQHVNWWWPTFVYNDFMY 188


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 20/71 (28%), Positives = 27/71 (38%)
 Frame = -1

Query: 349  CFGAKLXFYHFPSVEHILTESYFQHTMYKYVSEVYQDHVFCRELAPTSRQYYSTLFYCNF 170
            C  AKL  Y         +  Y Q     Y+S +        E    S   +S LF  N 
Sbjct: 1472 CNMAKL--YADAKTNGFASSQYLQSLFIHYLSSLLSSMQHSYETNGHSSDTHS-LFVINS 1528

Query: 169  QRIIKHILTFC 137
            QR++  IL +C
Sbjct: 1529 QRVVGDILQYC 1539


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 316 PSVEHILTESYFQHTMYK 263
           PSVE  LT   FQH  +K
Sbjct: 188 PSVESFLTPLIFQHVFFK 205


>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -3

Query: 329 FLPFSVGRTYFNGVLLSAHHVQVRFGGLPGPRILP-GAGPDEP 204
           F  F  G  +   +    H++  R G  PG R+L  G G   P
Sbjct: 96  FSRFYKGEAFAQSIARHEHYLAYRMGIKPGSRVLDVGCGVGGP 138


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 8   RYLPKIPTV*RCLYLSLFKYLFRRNS 85
           R L    T+ RC++  LF   F RNS
Sbjct: 187 RVLISFFTLSRCIFQGLFSTFFHRNS 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,372,733
Number of Sequences: 5004
Number of extensions: 24615
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)