Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21g21
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0931 - 26052135-26052176,26052273-26052377,26052489-260525...    32   0.12 
07_03_1170 - 24505743-24505875,24506087-24506475,24507133-245073...    28   1.9  
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235...    28   1.9  
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555...    27   3.3  

>06_03_0931 -
           26052135-26052176,26052273-26052377,26052489-26052584,
           26052686-26052757,26052879-26052974,26053054-26053155,
           26053258-26053347,26053452-26053535,26053623-26053697,
           26053847-26053930,26054012-26054242
          Length = 358

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 244 QDHVFCRELAPTSRQYYSTLFYCNFQRII 158
           Q HV  R LAPT    ++TLF C F  +I
Sbjct: 222 QQHVLKRPLAPTKSVVFATLFMCCFSSVI 250


>07_03_1170 -
           24505743-24505875,24506087-24506475,24507133-24507369,
           24507967-24508136,24510196-24510316
          Length = 349

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = -1

Query: 262 YVSEVYQDHVFCRELAPTSRQYYSTLFYCNFQRIIKHILT 143
           ++ ++ + H+FC E    + ++   + Y N Q  + H +T
Sbjct: 256 HIEDICEAHIFCAEQPSIAGRFLCAVGYPNMQDYVDHFVT 295


>06_01_0324 -
           2357432-2357724,2358042-2358105,2358321-2358404,
           2358638-2358715,2359298-2359360,2359459-2359561,
           2359675-2359800,2360212-2360258,2361284-2361388,
           2361483-2361605,2361759-2361854,2362052-2362141,
           2362759-2362815,2362899-2363028,2363613-2363708,
           2363815-2363875,2364391-2364490
          Length = 571

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 158 NYALKVTIKQCRIILSARRGQLPAKYVVLVDLRNVLVHGVLK 283
           N+AL  T+ +CR+ +    G  P    VL+ L N L    LK
Sbjct: 166 NHALGATLVKCRMYVGNVHGDEPVGREVLIKLANWLCDNYLK 207


>04_03_0147 -
           11853940-11854128,11854933-11855013,11855501-11855584,
           11855663-11855735,11855888-11855949,11856246-11856327,
           11857643-11858262
          Length = 396

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 225 GSWPRRADSIIRHC 184
           G W R+ADS +RHC
Sbjct: 320 GLWKRKADSTLRHC 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,981,459
Number of Sequences: 37544
Number of extensions: 135266
Number of successful extensions: 338
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)