Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21g20
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.9  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   9.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.1  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
 Frame = +3

Query: 15  PPVGPHATRYS*SPRG*TVSS--VAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSVAPP 188
           PP  P   R    P     ++  +   +P PP       A P +  G+ R +      PP
Sbjct: 25  PPTRPARLRREAKPEAEPGNNRPIYIPQPRPPHPRLRREAEPKAEPGNNRPIYIPQPRPP 84

Query: 189 ATLHTRGEESSPSP 230
                R  ES   P
Sbjct: 85  HPRLRREAESEAEP 98


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -1

Query: 223 GLLSSPLVCNV----AGGATLEYRSTRPSPRREYGA 128
           G+  SP+  N+        +L Y +T+P  + EYGA
Sbjct: 256 GMALSPMTNNLYYSPLSSRSLYYVNTKPFMKSEYGA 291


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 81  AATRPLPPDRGAASRAAPYSRLG 149
           ++T   PP +GAA+   P  R G
Sbjct: 523 SSTSSSPPAKGAAAAGQPSKRNG 545


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -2

Query: 87  SRQRSTPFSPEGSNCN 40
           S+++ +P +P+GS C+
Sbjct: 270 SKKKLSPATPKGSKCS 285


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 13/51 (25%), Positives = 18/51 (35%)
 Frame = +3

Query: 78  VAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSVAPPATLHTRGEESSPSP 230
           V  ++P PP       A P +  G+ R +      PP     R  E    P
Sbjct: 159 VYISQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEP 209


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 235  SAGDGLLSSPLVC 197
            S GDG+ S+P+ C
Sbjct: 1161 SGGDGVKSAPIHC 1173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,288
Number of Sequences: 438
Number of extensions: 2137
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)