Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21g17
         (440 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031265-1|AAH31265.1|  305|Homo sapiens tetraspanin 12 protein.       30   3.1  
AY358703-1|AAQ89066.1|  305|Homo sapiens NET-2 protein.                30   3.1  
AF124522-1|AAD17317.1|  305|Homo sapiens tetraspan NET-2 protein.      30   3.1  
AC004456-1|AAQ96879.1|  305|Homo sapiens unknown protein.              30   3.1  
BC032109-1|AAH32109.1|  859|Homo sapiens low density lipoprotein...    29   7.1  
AF166350-1|AAD44360.1|  859|Homo sapiens ST7 protein protein.          29   7.1  
AB208957-1|BAD92194.1|  793|Homo sapiens suppression of tumorige...    29   7.1  
AJ406941-1|CAC27580.1|  191|Homo sapiens keratin associated prot...    25   7.5  

>BC031265-1|AAH31265.1|  305|Homo sapiens tetraspanin 12 protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 330 TIKRPMLILPMYFCSLFVLFC 392
           T+KR +L+L  YF SL V+FC
Sbjct: 85  TVKRNLLLLAWYFGSLLVIFC 105


>AY358703-1|AAQ89066.1|  305|Homo sapiens NET-2 protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 330 TIKRPMLILPMYFCSLFVLFC 392
           T+KR +L+L  YF SL V+FC
Sbjct: 85  TVKRNLLLLAWYFGSLLVIFC 105


>AF124522-1|AAD17317.1|  305|Homo sapiens tetraspan NET-2 protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 330 TIKRPMLILPMYFCSLFVLFC 392
           T+KR +L+L  YF SL V+FC
Sbjct: 85  TVKRNLLLLAWYFGSLLVIFC 105


>AC004456-1|AAQ96879.1|  305|Homo sapiens unknown protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 330 TIKRPMLILPMYFCSLFVLFC 392
           T+KR +L+L  YF SL V+FC
Sbjct: 85  TVKRNLLLLAWYFGSLLVIFC 105


>BC032109-1|AAH32109.1|  859|Homo sapiens low density
           lipoprotein-related protein 12 protein.
          Length = 859

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 287 CTLLKFLFLNCTQSVYCSRNFQNRLFET 204
           C LL  + L CT  +Y  R F+ R FET
Sbjct: 504 CGLLLVIALGCTCKLYSLRMFERRSFET 531


>AF166350-1|AAD44360.1|  859|Homo sapiens ST7 protein protein.
          Length = 859

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 287 CTLLKFLFLNCTQSVYCSRNFQNRLFET 204
           C LL  + L CT  +Y  R F+ R FET
Sbjct: 504 CGLLLVIALGCTCKLYSLRMFERRSFET 531


>AB208957-1|BAD92194.1|  793|Homo sapiens suppression of
           tumorigenicity variant protein.
          Length = 793

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 287 CTLLKFLFLNCTQSVYCSRNFQNRLFET 204
           C LL  + L CT  +Y  R F+ R FET
Sbjct: 438 CGLLLVIALGCTCKLYSLRMFERRSFET 465


>AJ406941-1|CAC27580.1|  191|Homo sapiens keratin associated protein
           4.9 protein.
          Length = 191

 Score = 25.0 bits (52), Expect(2) = 7.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 191 CCQAVCCWPHL*SIPSTLTNGALETLRFR 105
           CCQ+VCC P   S PS        T  +R
Sbjct: 35  CCQSVCCQPTC-SRPSCCQTTCCRTTCYR 62



 Score = 22.6 bits (46), Expect(2) = 7.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 194 TCCQAVCCWP 165
           TCC+  CC P
Sbjct: 14  TCCRTTCCRP 23


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,116,345
Number of Sequences: 237096
Number of extensions: 1246445
Number of successful extensions: 2918
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2910
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)