Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21g17
(440 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF024494-10|AAB70336.1| 642|Caenorhabditis elegans Hypothetical... 30 0.86
AF025472-4|AAB71071.1| 209|Caenorhabditis elegans Hypothetical ... 29 2.0
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF016444-6|AAB65933.1| 330|Caenorhabditis elegans Serpentine re... 27 6.0
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z49911-1|CAA90131.2| 647|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 27 8.0
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 27 8.0
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 27 8.0
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 27 8.0
>AF024494-10|AAB70336.1| 642|Caenorhabditis elegans Hypothetical
protein C38C3.7 protein.
Length = 642
Score = 29.9 bits (64), Expect = 0.86
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Frame = +2
Query: 143 WRELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTKT-LTMYNERI--RAALN 313
W +I+++ N+ P T+F++ FE+ + +++++ T T+ N +I R AL+
Sbjct: 311 WISIIVSIDNSEPPSPQKFTVFKRMGFEDCETVEDFIWHVENSTKKTVKNAKIERRLALH 370
Query: 314 RPAR-FND---QTTNVNIAYV 364
+ +R F D + VN+ Y+
Sbjct: 371 KVSRKFKDAVSRKAKVNLEYL 391
>AF025472-4|AAB71071.1| 209|Caenorhabditis elegans Hypothetical
protein ZK250.2 protein.
Length = 209
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 168 PTTHRLTTRLEQCFKKPILKISTTIHRLC 254
PTTH T E+ P++++ST ++C
Sbjct: 54 PTTHAETGMTEEMMTTPVVEVSTVTEKVC 82
>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
protein D1044.6 protein.
Length = 1009
Score = 27.5 bits (58), Expect = 4.6
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 182 LDNTFRTMFQKADFENFDYNT---PIVYNLKTKTLTMYNERIRAALNRPARFNDQTTNVN 352
+D + +F+ +D E F T P +LK + L +ERI L RF+ T V
Sbjct: 10 IDPSLADLFRNSDKEPFPAMTHELPPEKSLKARLLEQEDERISNVLAHEKRFS--TEPVV 67
Query: 353 IAYVFLFFICI 385
I VF+ +C+
Sbjct: 68 IDDVFMSRLCV 78
>Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical
protein F18E2.2 protein.
Length = 622
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 229 FRLQYTDCVQFKNKNFNNVQRENKSCSQQTRSI*RSNDQ 345
F+ QY +Q KNF+ Q++ K+ ++ +S ++ +Q
Sbjct: 312 FKKQYAQDMQVHEKNFDQQQKQLKAMKKEGKSAKQAEEQ 350
>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical
protein E03G2.2 protein.
Length = 1503
Score = 27.1 bits (57), Expect = 6.0
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +2
Query: 53 AVVVNMWESIRWQILNGDEIE 115
+V+V +W+ ++W+IL G I+
Sbjct: 299 SVIVTLWQIMKWEILGGSFIK 319
>AF016444-6|AAB65933.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 7 protein.
Length = 330
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 250 NRCIVVEIFKIGFLKHCSKRVVKRCVVGHIY 158
N I+ ++ GF HCS R+V + H Y
Sbjct: 57 NVIIIFQVHWFGFFLHCSNRIVLHTIDLHNY 87
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical protein
T06D8.1b protein.
Length = 3653
Score = 26.6 bits (56), Expect = 8.0
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Frame = +2
Query: 53 AVVVNMWESIRWQILNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFE-- 226
A V N W + G++ S A + I ++ L FQ E
Sbjct: 852 AAVTNPWGETETPLSEGEKTTTSSPKEEAATLKTIGQEVDDDSLLKGCIVHFQSQPIEER 911
Query: 227 NFDYNTPIVYNLKTKTLTMYNERIRAALNRPARFNDQTTNVNIAY 361
N ++ P NLK T + R A+++ T ++AY
Sbjct: 912 NKEFTAPFELNLKVPTAEICAHRCYQDGCTAAKYDPSTQQCSLAY 956
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 26.6 bits (56), Expect = 8.0
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Frame = +2
Query: 53 AVVVNMWESIRWQILNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFE-- 226
A V N W + G++ S A + I ++ L FQ E
Sbjct: 852 AAVTNPWGETETPLSEGEKTTTSSPKEEAATLKTIGQEVDDDSLLKGCIVHFQSQPIEER 911
Query: 227 NFDYNTPIVYNLKTKTLTMYNERIRAALNRPARFNDQTTNVNIAY 361
N ++ P NLK T + R A+++ T ++AY
Sbjct: 912 NKEFTAPFELNLKVPTAEICAHRCYQDGCTAAKYDPSTQQCSLAY 956
>Z49911-1|CAA90131.2| 647|Caenorhabditis elegans Hypothetical
protein M28.1 protein.
Length = 647
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 260 NCTQSVYCSRNFQNRLFETLF*TCCQAVCC 171
NCTQSV+ N + +F ++F Q + C
Sbjct: 614 NCTQSVFLFLNIFDTVFNSIFKKNVQLILC 643
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 26.6 bits (56), Expect = 8.0
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Frame = +2
Query: 53 AVVVNMWESIRWQILNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFE-- 226
A V N W + G++ S A + I ++ L FQ E
Sbjct: 852 AAVTNPWGETETPLSEGEKTTTSSPKEEAATLKTIGQEVDDDSLLKGCIVHFQSQPIEER 911
Query: 227 NFDYNTPIVYNLKTKTLTMYNERIRAALNRPARFNDQTTNVNIAY 361
N ++ P NLK T + R A+++ T ++AY
Sbjct: 912 NKEFTAPFELNLKVPTAEICAHRCYQDGCTAAKYDPSTQQCSLAY 956
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 26.6 bits (56), Expect = 8.0
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Frame = +2
Query: 53 AVVVNMWESIRWQILNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFE-- 226
A V N W + G++ S A + I ++ L FQ E
Sbjct: 852 AAVTNPWGETETPLSEGEKTTTSSPKEEAATLKTIGQEVDDDSLLKGCIVHFQSQPIEER 911
Query: 227 NFDYNTPIVYNLKTKTLTMYNERIRAALNRPARFNDQTTNVNIAY 361
N ++ P NLK T + R A+++ T ++AY
Sbjct: 912 NKEFTAPFELNLKVPTAEICAHRCYQDGCTAAKYDPSTQQCSLAY 956
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 26.6 bits (56), Expect = 8.0
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Frame = +2
Query: 53 AVVVNMWESIRWQILNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFE-- 226
A V N W + G++ S A + I ++ L FQ E
Sbjct: 852 AAVTNPWGETETPLSEGEKTTTSSPKEEAATLKTIGQEVDDDSLLKGCIVHFQSQPIEER 911
Query: 227 NFDYNTPIVYNLKTKTLTMYNERIRAALNRPARFNDQTTNVNIAY 361
N ++ P NLK T + R A+++ T ++AY
Sbjct: 912 NKEFTAPFELNLKVPTAEICAHRCYQDGCTAAKYDPSTQQCSLAY 956
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 26.6 bits (56), Expect = 8.0
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Frame = +2
Query: 53 AVVVNMWESIRWQILNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFE-- 226
A V N W + G++ S A + I ++ L FQ E
Sbjct: 852 AAVTNPWGETETPLSEGEKTTTSSPKEEAATLKTIGQEVDDDSLLKGCIVHFQSQPIEER 911
Query: 227 NFDYNTPIVYNLKTKTLTMYNERIRAALNRPARFNDQTTNVNIAY 361
N ++ P NLK T + R A+++ T ++AY
Sbjct: 912 NKEFTAPFELNLKVPTAEICAHRCYQDGCTAAKYDPSTQQCSLAY 956
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,829,662
Number of Sequences: 27780
Number of extensions: 229336
Number of successful extensions: 725
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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