Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21g13
         (250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0418 + 21096532-21096627,21096749-21096963,21097062-21097371     28   0.91 
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    28   1.2  
06_03_1040 + 27082978-27083086,27083574-27083632,27083759-270838...    26   4.8  
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    25   6.4  
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220...    25   8.5  

>05_04_0418 + 21096532-21096627,21096749-21096963,21097062-21097371
          Length = 206

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 103 RVTLSA*EVCGCCCKNCATNNYP*CSTGNI 14
           +VT+SA   CGCCC N      P   T  +
Sbjct: 65  QVTVSAIGGCGCCCGNGKPRGIPSSKTNRV 94


>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 64  NNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKEN-MPGEHDHKF 198
           N+N++  +PT+  D N+ KS   NI  V    C  N  P E    F
Sbjct: 178 NDNKQDSRPTSSMDHNVTKSPGSNIPAVESGRCVVNSAPDEPSSSF 223


>06_03_1040 +
           27082978-27083086,27083574-27083632,27083759-27083833,
           27083908-27084024,27084207-27084277,27084432-27084732,
           27084949-27085238,27085779-27085833
          Length = 358

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 43  YSLHNFYNNNRKPLKPTTLHDGNIKKSVYENIT 141
           Y L NFY N+R+ +K  + +DG ++ +   N T
Sbjct: 133 YQLDNFYQNHRRYVK--SRNDGQLRDAAKANQT 163


>08_01_0114 -
           900530-901191,901269-901338,901536-901640,901721-901831,
           901912-902016,902245-902391,903273-903354,903445-903786,
           903873-904177,904259-904435,904799-904852,905171-905254,
           905855-905968,906048-906321,907552-907926,908003-908267,
           908352-908538,908615-909052,909895-909966,910037-910630,
           911471-911623,911700-911828,912326-912657,912705-912840,
           913046-913491,913580-915087,915169-915431,915622-915738,
           915844-916014,916743-916845,916930-916988,918360-918461,
           918560-918649,918727-918877,919745-919830,919926-920102,
           920915-920978,921859-922008,923132-923211,923311-923376,
           924540-924747,925502-925575,925761-925848,926140-926312,
           926541-926609,926698-926741,927074-927167,927290-927366,
           927475-927552,927992-928085
          Length = 3314

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 232 YICFLCYNRDCKTC 191
           Y C LC + +CKTC
Sbjct: 921 YSCVLCLSGNCKTC 934


>04_03_0153 +
           11919769-11919880,11920190-11920488,11921909-11922024,
           11922113-11922248,11922959-11923006,11924130-11924228,
           11924317-11924385,11924465-11924599,11924687-11924755,
           11925221-11925276,11925465-11925624,11926534-11926698,
           11927484-11927568,11927646-11927849,11928396-11928487,
           11928571-11928613,11930727-11930884,11931520-11931630,
           11931947-11932012,11933716-11933784,11934181-11934255,
           11934330-11934506,11934598-11934683,11936259-11936313,
           11936901-11936939,11938105-11938230,11938319-11938432,
           11939208-11939265,11939485-11939623,11939698-11939783,
           11939842-11940041
          Length = 1148

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +1

Query: 28  CTMDNYSLHNFYNNNRKPLKPTTLHDGNIK---KSVYENITYVRKLMCKENMPGEHDHKF 198
           C++D Y + + +   RK ++P  LH   I+     V        KL CK  +P  H+  F
Sbjct: 313 CSLD-YLIDSIFPLFRKHIEPD-LHHAQIRIDNSFVCSFREPYYKLKCKNELPDGHNLYF 370

Query: 199 YNR 207
           +N+
Sbjct: 371 FNQ 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,546,129
Number of Sequences: 37544
Number of extensions: 89006
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)