Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21g05
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 27 1.5
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 27 2.0
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 2.6
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 26 3.4
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 3.4
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 26 3.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.5
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 25 6.0
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 7.9
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 25 7.9
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.9
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 25 7.9
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/79 (22%), Positives = 31/79 (39%)
Frame = +2
Query: 140 IISLAEPVPETLRGHYSTLATLFKCTKCNKLLGRHIAELVPCQPASMRIDRRGNVVAAHT 319
+ SL E V R ST++ L H+ +VP + R + ++
Sbjct: 164 LFSLMEKVKPNGRLVLSTISRTLLARLLTITLAEHVLRIVPVGTHTFEKFIRADELSNFL 223
Query: 320 KDANWSLNEYISWLYGELR 376
K+ NW +N+ Y L+
Sbjct: 224 KEQNWIINDIRGVCYNPLK 242
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 449 FPAYQMEW--CSHHEQPPHMFSLEGRPPLPAGR 541
FP YQ E C+ +E P F L G PP+P G+
Sbjct: 443 FPVYQGERVNCAENE-PLGEFQLTGIPPMPRGQ 474
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 82 IGGDQGSQRQDPIEAVLQDDNIVS 153
I GDQG + I A++Q+DN+ S
Sbjct: 8 ICGDQGVGKSSLISALIQEDNVTS 31
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 380 RTSARRTARICTR*GSNLRLWYGRLQRSLSCR 285
R A T + R G N +W G+L +S +CR
Sbjct: 78 RDDAEVTRDLIEREGRNCWIWEGKLDKSDNCR 109
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 49 DKISGNVYKCGIGGDQGSQRQDPIEAVLQDDNIVSRTG 162
D ++GN K I + + R++PI +L D N +S G
Sbjct: 459 DTVTGNFLK-KIASARNAARREPINCILLDSNPLSLKG 495
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 131 STASIGSCLCDP*SPPIPHLYTLPLI 54
ST++ C P S +PH YT+P +
Sbjct: 278 STSAFSGLNCTPNSVFLPHTYTIPAV 303
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 4.5
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +3
Query: 282 ASTGEGTL*PPIPKTQIGASTSTYPGCTAS*GPGDECTGGCGPTVISYCVNCATTISPPT 461
+++ GT P+P T +TST S P T PTV + +T PP
Sbjct: 321 STSSTGTSSSPLPSTSTSCTTST------SIPPTGNSTTPVTPTVPPTSTSSTSTPPPPA 374
Query: 462 RWSGAPTTNS 491
S T++S
Sbjct: 375 STSSTGTSSS 384
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 290 RRGNVVAAHTKDANWSL 340
+RG++ A+H +DA WSL
Sbjct: 513 KRGSLSASHKRDAAWSL 529
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 356 WLYGELRSWRRVYWR-LWADCHFLLCQLCDNYF 451
+L RSW++ YW+ L + QLC N F
Sbjct: 440 YLQSSYRSWKKEYWKELLEEGRKFERQLCRNVF 472
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 167 ETLRGHYSTLATLFKCTKCNKLLGRHIAELVPCQPASMR 283
E +R Y L C CN+ L L PCQ A R
Sbjct: 822 ENMRNRYIVLEPNESCWHCNQPLFSEPFVLFPCQHAFHR 860
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Frame = -3
Query: 394 VHSSPGPQLAVQPGYVLVEAPICV------FGMGGY 305
V+++ GP L P V E P+C+ FG+G +
Sbjct: 280 VYNTEGPVLKFNPSTVKFEKPLCIAYYQHLFGLGAH 315
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 86 EAIKDRKDKIQSRLYCKMIISLAEPVPETLRGHYSTLA 199
E +K K+K + +L +I S PE++R + ST A
Sbjct: 489 EKLKKSKEKNEQKLSVNLISSFRISDPESIRFYSSTTA 526
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +3
Query: 417 ISYCVNCATTISPPTR--WSGAPTTNS 491
+++C NCATT +P R SG P N+
Sbjct: 169 VTFCQNCATTNTPLWRRDESGNPICNA 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,883
Number of Sequences: 5004
Number of extensions: 50755
Number of successful extensions: 175
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -