Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21g05
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0442 - 29044736-29046604 33 0.12
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 31 0.87
10_01_0123 + 1502668-1502756,1502975-1503446 29 2.0
06_03_0220 + 18276641-18276915,18278445-18278676 29 2.0
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 29 2.0
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 29 2.7
12_02_1217 + 27082452-27083593,27085041-27085158 29 3.5
04_04_1125 + 31085106-31085714 29 3.5
03_06_0750 - 35979783-35980061 29 3.5
01_06_0714 + 31413195-31413221,31414238-31414786 29 3.5
03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248 28 4.6
01_06_0956 - 33343503-33344086,33344225-33344384 28 4.6
10_08_0295 - 16581014-16583071 28 6.1
09_04_0181 + 15371687-15372011,15372105-15372214 28 6.1
03_06_0484 + 34233042-34233258,34235317-34237049 28 6.1
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 27 8.1
03_05_0315 - 23040153-23040325,23040717-23041051,23041201-23041289 27 8.1
01_07_0354 - 42969824-42969991,42970081-42970217,42970310-429704... 27 8.1
>02_05_0442 - 29044736-29046604
Length = 622
Score = 33.5 bits (73), Expect = 0.12
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -3
Query: 421 EMTVGPQPPVHSSPG--PQLAVQPGYVLVEAPICVFGMGGYNVPSPVDAHTRRLTRHQLG 248
+M VG PV S PG P+L V P Y E+ + F + G+N+ V+A +L
Sbjct: 386 DMVVGGGSPVGSDPGKVPRLGVIPRYATDESEMRWFEVPGFNIMHSVNA-WEEAGGEELV 444
Query: 247 YVPPQQLVALGALE 206
V P L ALE
Sbjct: 445 LVAPNVLSIEHALE 458
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 451 PRLPDGVVLPPRTASPHVLV 510
P LPD + LPPR PHV+V
Sbjct: 514 PPLPDEIALPPRGRLPHVIV 533
>10_01_0123 + 1502668-1502756,1502975-1503446
Length = 186
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 5 VKTTTNL--ACLSDALLTRLAAMYTNAELEAIKDRKDKIQSRLYCKMIISLAEPVPE 169
+K TNL AC+ + + RL A +A + D KDK+ + C+++ A V +
Sbjct: 81 LKWATNLEVACIVEEEILRLDAAIVHATRVVVPDSKDKLPKVVLCEVLYHAAGRVEQ 137
>06_03_0220 + 18276641-18276915,18278445-18278676
Length = 168
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 253 AGAVSAGEYAHRQERERCSRPYQRRKLEP 339
AG AG R+ER RCSRP L P
Sbjct: 78 AGRARAGRAQERRERSRCSRPPFSEALPP 106
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +2
Query: 5 VKTTTNLACLSDALLTRLAAMYTNAELEAIKDRKDK------IQSRLYCKMIISLAEPVP 166
V+TT+ L C++D T+L M+++ E + + KD + L+C +EPV
Sbjct: 495 VRTTSPLKCMTDEQWTKLVDMWSSPEHKKQEKYKDSEPTAIDLFKELHCSKTKGFSEPVK 554
Query: 167 ETL 175
+ +
Sbjct: 555 KAI 557
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +3
Query: 402 CGPTVISYCVNCA---TTISPPTRWSG-APTTNSLPTCSR 509
C + ++YC NCA +T+S ++S A T+++ TCSR
Sbjct: 108 CSFSYLTYCANCAFLVSTVSLQLKFSAFARFTHNIVTCSR 147
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = -3
Query: 391 HSSPGPQLAVQPGYVLVEAP----ICVFG--MGGYNVPSPVDAHTRRLTRHQLGYVPPQQ 230
H P P+ + P +V V A +C+ G G Y V +P RL RH +V P
Sbjct: 104 HLIPDPRFSALPEHVAVLASTRGLVCLRGETTGSYYVANPATFRRVRLPRHTRDHVDPAV 163
Query: 229 LV 224
++
Sbjct: 164 VI 165
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 438 ATTISPPTRWSGAPTTNSLPTCSRW 512
AT +PPT W+ P T + PT + W
Sbjct: 54 ATPTTPPTPWTPPPATPTPPTPTPW 78
>03_06_0750 - 35979783-35980061
Length = 92
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 431 QLCDNYFPAYQMEWCSHHEQPPHMFSL-EGRPPLPAGRYPCCG 556
+L + P+Y + C H+ + L +G PP A Y CCG
Sbjct: 30 RLSCRFHPSYFV--CRRHDDQKRYYQLRDGDPPYAAKFYDCCG 70
>01_06_0714 + 31413195-31413221,31414238-31414786
Length = 191
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +2
Query: 329 NWSLNEY--ISWL--YGELRSWRRVYWRLWADCHFLLCQLC 439
+W+L++ +WL + LR+ R+ R W +C+F CQLC
Sbjct: 68 SWALSKCKNFAWLLLHNRLRTADRLQIRQWPNCYF--CQLC 106
>03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248
Length = 496
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Frame = +1
Query: 232 AGAAHSRAGAVSAGEYAHRQERERCSRPYQRRKLEPQRVHILAVRRAEVLETSVLAAV-G 408
A S + VS A P Q+R +PQ + L AV G
Sbjct: 48 AANTQSTSSPVSPASPAMISSSSSSLPPQQQRTWQPQPTTFSQANPGHAYQQDHLPAVAG 107
Query: 409 RLSFPTVSTVRQLFPRLPDGVVL 477
R FP + Q + + PDGV +
Sbjct: 108 RRFFPPPAMQMQYYHQQPDGVAM 130
>01_06_0956 - 33343503-33344086,33344225-33344384
Length = 247
Score = 28.3 bits (60), Expect = 4.6
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Frame = -3
Query: 493 RLFVVGAPLHLVGGEIVVAQLTQ*EMTVGPQPPVHSSPGPQLAVQPGYVLVEAPICVFGM 314
R F+ GAP H G +V + P PP P P+ + + P +
Sbjct: 98 RYFICGAPGHCQSGMKLVVDVADRPAPATPSPPPLLPPSPRHKRRTAPAPMPLPPAQAPV 157
Query: 313 GGYNVPSPVDAHTRRL----TRHQLGYVPPQQLVALGALEQCCQS 191
P+P A T+R +H+ ++PP+ A+ Q ++
Sbjct: 158 WS---PAPAPAATQRRHSGHKKHRSRHLPPKPAPAMAPTVQSVEA 199
>10_08_0295 - 16581014-16583071
Length = 685
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 451 PRLPDGVVLPPRTASPHVLV 510
P LPD + PPR PHV+V
Sbjct: 201 PPLPDEIAPPPRGRLPHVIV 220
>09_04_0181 + 15371687-15372011,15372105-15372214
Length = 144
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 148 VSRTGTGNATRALFHSGNTXXXXXXXXXAGAAHSRAGAVSAGEYA 282
VS +G+G+ + ++ +G+T G A S AG+ SAG YA
Sbjct: 63 VSASGSGSGSGSVAGAGSTSGSRSGSVSIGGASSSAGS-SAGSYA 106
>03_06_0484 + 34233042-34233258,34235317-34237049
Length = 649
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 4 CQDHHESGVFERRFTDKISGNVYKCGIGGDQGSQRQDPIEAVLQD 138
C D +G+ DK +G K I D+G ++ IE ++QD
Sbjct: 484 CFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQD 528
>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 252 SWCRVSRRVCASTGEGTL*PPIP 320
SW V AST EG L PP+P
Sbjct: 1022 SWLTAEAAVAASTEEGFLPPPLP 1044
>03_05_0315 - 23040153-23040325,23040717-23041051,23041201-23041289
Length = 198
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 280 HTRRLTRHQLGYVPPQQLVALGALEQ 203
H +R+ RHQ G PP ++V L E+
Sbjct: 155 HQKRMGRHQKGSTPPSRVVQLELPEE 180
>01_07_0354 -
42969824-42969991,42970081-42970217,42970310-42970449,
42970703-42970806,42970924-42971040,42971137-42971223,
42971309-42971410,42971643-42971740,42971835-42971910,
42971992-42972156
Length = 397
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 325 RKLEPQRVHILAVRRAEVLETSVLAAVGRLSFP 423
R PQ+VH+ A A L T V AA S P
Sbjct: 2 RMAAPQQVHVRAAPLARALRTRVAAAAASASSP 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,614,070
Number of Sequences: 37544
Number of extensions: 433283
Number of successful extensions: 1614
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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