Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21f23
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891           27   6.7  
12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042...    27   8.8  

>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
          Length = 1274

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 272 LLLSNRIHHLRYSSFHLVTLNQRFTWNGRVRTFRDRFTFCLI 147
           L L+NR  H++  +F+      R T NG V++F   F F +I
Sbjct: 50  LELTNRTVHIKGHAFYPTPWQFRKTPNGTVQSFSINFVFGMI 91


>12_02_0828 -
           23502276-23503472,23503568-23504002,23504097-23504213,
           23505330-23505396,23505685-23505725,23506161-23506237,
           23506699-23506945
          Length = 726

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 177 RPNAPVPSKSLIERNKMKAAVTKMVNSVAEQQLRALA 287
           +PN P P+ S  ER  + A ++K+ +   E+Q  A A
Sbjct: 385 QPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAA 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,580,378
Number of Sequences: 37544
Number of extensions: 113587
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)