Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21f20
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    29   0.32 
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    27   1.7  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   1.7  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   3.0  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   5.3  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    25   5.3  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   7.0  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   9.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   9.2  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   9.2  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 21/78 (26%), Positives = 36/78 (46%)
 Frame = -1

Query: 527 TVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTFNRLFSS 348
           ++ R  LL   +L P  T  S++   +A   + N L  C+  K    ++L    ++LF+ 
Sbjct: 737 SIIRHALLAKLVLFPENTADSLNEVLAA---YKNTLDLCSQDKRKQSSVLKINLSKLFTL 793

Query: 347 DSTDSLLCPKLGDASVKE 294
            S  SL   +LG   V +
Sbjct: 794 HSCLSLALQRLGYGDVSK 811


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -1

Query: 503 VPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF---NRLFSSDSTDS 333
           +P  L P   +S+I     +  +W+ +LS  +      R  ++FT     +  + DS  S
Sbjct: 318 LPISLNPDFLISNIHKVSESPRVWVTILSSLSRSCQKFRKKIAFTLFVGKQSKNDDSDFS 377

Query: 332 LLCPKLGDAS 303
            LC +L + S
Sbjct: 378 SLCQRLDEIS 387


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +2

Query: 29  SAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 181
           S FG+    +C+      +  FT S K        W   N +V ++H +N+
Sbjct: 120 SFFGNISAIFCDDKFPYAYATFTFSDKPSFTSIYRWNVTNSNVTIEHFYNV 170


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 65  QFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 181
           Q + A  + ++L    +   P  WEND    LLK  H +
Sbjct: 750 QLMVANLDTYSLDCYEIHEFPSEWENDYAPFLLKEHHKV 788


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 18  WSTSLRSAATLLTIANSLSRPFSKFLRSAVKSL 116
           WSTS    ++LL I   +  P SK L   +KS+
Sbjct: 359 WSTSWEMLSSLLAIDFDVLLPHSKILWECIKSV 391


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 521 PRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAM-RKL 396
           P + ++ PT++E +  ++  D  +S    W N  SP ++ RKL
Sbjct: 514 PNREIIQPTIVESTSFLAWKDEAYSLGMEWANAYSPDSISRKL 556


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 295 SLTEASPSLGQSSESVESDENKRLNVKLN--NARVANLRIAHGDNKLSQ 435
           SLT+A  SL + S+SVE  +  +L+ +L+    ++AN R   G   L Q
Sbjct: 16  SLTDAIDSLDKRSDSVEV-KIAKLDAQLSVFQQKIANTRPGPGQTALKQ 63


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 406 IAHGDNKLSQMYIAEKPLSIDDIVKEGSNKV 498
           I HG+NK ++  IA     I DIV   +N V
Sbjct: 274 IVHGNNKNARKNIATLKSKIRDIVNSDANVV 304


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 36  SAATLLTIANSLSRPFSKFLRSAVKSLWPC 125
           SA TLL IA+ L +      ++ +K LW C
Sbjct: 538 SALTLLPIADKLVQEKLSSCKNLLKVLWDC 567


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 412 HGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIF 516
           +G  KL  +   E PLS +D++  GSN   T+ +F
Sbjct: 508 NGSMKLDSIQ-GEIPLSNNDVLYRGSNLRNTSELF 541


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 488 EPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTFN 363
           +P++    I SG+   Y +LNL+ P     +   ++L    N
Sbjct: 27  KPNIRKEMISSGYVNTYEYLNLILPPEENAITNLSMLELATN 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,547
Number of Sequences: 5004
Number of extensions: 40153
Number of successful extensions: 126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)