Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21f20
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 29 2.3
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 4.0
09_02_0060 + 3729613-3729863,3730377-3730392 28 4.0
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 28 4.0
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 28 5.3
06_03_0830 + 25159758-25162460 28 5.3
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 28 5.3
04_03_0457 + 16113087-16113249,16113468-16113498,16114138-161142... 27 9.3
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 26 ESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 181
E G+NV+ CE A+ + +S +V + W + L+ L ++ +
Sbjct: 182 EPEAGANVVKSCESLFAALVGLTAVSLHLVETFLIKWRKEKLTQLTVYVFQM 233
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +2
Query: 11 VNLVDESAFGSNVINYCEQF--ITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 184
V +VDE +GS + Y E+ I FE F ++ + P++ E N+ +LL+ + +L
Sbjct: 856 VPIVDEEFYGSKLRGYVEELRAIGVQFE-FANANLHIADQPLSME--NVILLLQWIKDLR 912
Query: 185 LIGIEI 202
IG+++
Sbjct: 913 SIGVQL 918
>09_02_0060 + 3729613-3729863,3730377-3730392
Length = 88
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 403 ANWPPGRY*ALRLIVCSRLIPPIRC 329
A WPP RY + R C R +P + C
Sbjct: 35 AKWPPSRYRSYR-ATCCRAVPSLLC 58
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -2
Query: 358 CSRLIPPIRC-SALNWATPRLR 296
CS +PP+RC L W+ PR++
Sbjct: 23 CSSRLPPLRCFVGLRWSAPRIQ 44
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 274 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 453
T N+ L + SP+ S+ +E D KR+ L I +G + + +E+
Sbjct: 154 TGLHNIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEIRLVILNGGSMIYYSNPSEQ 213
Query: 454 PLSID 468
P S+D
Sbjct: 214 PFSVD 218
>06_03_0830 + 25159758-25162460
Length = 900
Score = 27.9 bits (59), Expect = 5.3
Identities = 23/83 (27%), Positives = 34/83 (40%)
Frame = +1
Query: 271 WTNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAE 450
W + ++ ASP E S ++R L + V+ A LS +
Sbjct: 554 WKGSAATSAFRPASPRCTPDGEKSVSASSQRTGNALFDLNVSESDNATAGEPLSAAIL-- 611
Query: 451 KPLSIDDIVKEGSNKVGTNSIFL 519
PLS D + K+ S VG NS+ L
Sbjct: 612 -PLSSDIVRKDASATVGLNSLEL 633
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +1
Query: 283 LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 462
++ + L + LG E + DE RL + + A+ + GDN M+ ++ +
Sbjct: 450 ISKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDTHVR 509
Query: 463 IDDIVKEGS 489
+ D+V++ +
Sbjct: 510 LHDVVRDAA 518
>04_03_0457 +
16113087-16113249,16113468-16113498,16114138-16114271,
16114370-16114518,16114974-16115039,16115159-16115206,
16115293-16115496,16115614-16115637
Length = 272
Score = 27.1 bits (57), Expect = 9.3
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +1
Query: 283 LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 462
+N ++ +AS + G+ +E ESD++ ++NV+ N + G KL ++ K L
Sbjct: 81 VNEDTDDDASMNAGEGNE--ESDDDVKINVRDENGTIE----TRGKTKLKDIWNLPKGLR 134
Query: 463 I----DDIVKEGSNKVGTNSIFLG 522
I +D+ + ++ G S FLG
Sbjct: 135 IVVQCNDLNQAVGDEAGILSKFLG 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,173,811
Number of Sequences: 37544
Number of extensions: 244103
Number of successful extensions: 602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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