Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21f08
         (356 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7GX24 Cluster: KWG; n=2; Campylobacter|Rep: KWG - Camp...    33   1.9  
UniRef50_Q61XR0 Cluster: Putative uncharacterized protein CBG038...    32   3.4  
UniRef50_Q8CXM1 Cluster: Leader peptide processing enzyme; n=3; ...    31   4.4  
UniRef50_A5K6E2 Cluster: TBC domain containing protein; n=2; Pla...    31   4.4  
UniRef50_A0CEF0 Cluster: Chromosome undetermined scaffold_171, w...    31   5.9  
UniRef50_Q0DKR9 Cluster: Os05g0147300 protein; n=2; Oryza sativa...    31   7.7  
UniRef50_Q9T6M3 Cluster: NADH-ubiquinone oxidoreductase chain 4;...    31   7.7  
UniRef50_Q23UD2 Cluster: Phospholipid-translocating P-type ATPas...    31   7.7  
UniRef50_Q89AT5 Cluster: NADH-quinone oxidoreductase subunit M; ...    31   7.7  

>UniRef50_A7GX24 Cluster: KWG; n=2; Campylobacter|Rep: KWG -
           Campylobacter curvus 525.92
          Length = 749

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -2

Query: 136 DDLSSLEHAFGIFVAHLVSILQFRVGFFSFSNEL 35
           D+L++ E  FGIF+A + S + F + FFS +N +
Sbjct: 683 DELNAKERIFGIFMAAITSFISFFMLFFSTTNAI 716


>UniRef50_Q61XR0 Cluster: Putative uncharacterized protein CBG03880;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG03880 - Caenorhabditis
           briggsae
          Length = 516

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 17/62 (27%), Positives = 36/62 (58%)
 Frame = +2

Query: 11  PQNFYQSLKFIAKTKKANAKLKYADEMRDKNPECVFKRRKIIAKSRKNRRNIVGSTKTLN 190
           P+  ++++ F    K  + KLK+ADE+R+K  E   ++R+   K+ +NR  ++   + L+
Sbjct: 81  PRTPHRAIPFSEAEKNPDQKLKHADELRNKALE---EKREKARKAEENRAAVLQRKQELD 137

Query: 191 AV 196
            +
Sbjct: 138 RI 139


>UniRef50_Q8CXM1 Cluster: Leader peptide processing enzyme; n=3;
           Bacillaceae|Rep: Leader peptide processing enzyme -
           Oceanobacillus iheyensis
          Length = 251

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 177 VLPTIFLLFFLDFAMIFRLLNTHSGFLSRISSAYFNFALAFLVLAMN 37
           V+P   LLFFL   +I RLL     + S  + A   F + FL++ ++
Sbjct: 122 VIPNKLLLFFLPIFIILRLLLPLDPWWSMFTGAAIGFGIIFLIILIS 168


>UniRef50_A5K6E2 Cluster: TBC domain containing protein; n=2;
           Plasmodium|Rep: TBC domain containing protein -
           Plasmodium vivax
          Length = 1220

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 159 LLFFLDFAM--IFRLLNTHSGFLSRISSAY-FNFALAFLVLAMNFND**KFC 13
           LL F  +A   +FR+LN +S F   +      NF +  L++  NFN+   FC
Sbjct: 282 LLIFDKYAQEQLFRILNAYSNFEPSVGYCQGMNFLVGLLLIVSNFNEIETFC 333


>UniRef50_A0CEF0 Cluster: Chromosome undetermined scaffold_171,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_171,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2282

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -3

Query: 168 TIFLLFFLDFAMIFRLLNTHSG---FLSRISSAYFNFALAFLVLAMNFND**KFCG 10
           T+    ++++  I+ +   HSG   F++ +SS Y  + + F +  + FND    CG
Sbjct: 276 TLLPNIYVNYQYIYGIFKYHSGVNRFINELSSNYSTYLIGFKITLITFNDIPLGCG 331


>UniRef50_Q0DKR9 Cluster: Os05g0147300 protein; n=2; Oryza
           sativa|Rep: Os05g0147300 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 211

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 187 KRFRTTNNISSILPRFRDDLSSLEHAFGIFVA 92
           K FR+ N+I+  LPRF++ L ++   F  +VA
Sbjct: 38  KTFRSVNSITMGLPRFKEGLRNIRDVFDQYVA 69


>UniRef50_Q9T6M3 Cluster: NADH-ubiquinone oxidoreductase chain 4;
           n=1; Globodera pallida|Rep: NADH-ubiquinone
           oxidoreductase chain 4 - Globodera pallida
          Length = 402

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 162 FLLFFLDFAM-IFRLLNTHSGFLSRISSAYFNFALAFLVLAMNFN 31
           F +FF  F M +F +LN+ SG + +    ++  AL F++  MNFN
Sbjct: 355 FCVFFFGFYMSLFLILNSFSGGVLKFYWFFYEGALVFII--MNFN 397


>UniRef50_Q23UD2 Cluster: Phospholipid-translocating P-type ATPase,
            flippase family protein; n=1; Tetrahymena thermophila
            SB210|Rep: Phospholipid-translocating P-type ATPase,
            flippase family protein - Tetrahymena thermophila SB210
          Length = 3047

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = -3

Query: 246  LVIT*KLKTFEYDQAK*TALSVFVLPTIFLLFFLDFAMIFRLLNTHSGFLSRISSAYFNF 67
            L+   K+ +F +  +    + VF     +LL +  +   F+L +  +    ++SS YF F
Sbjct: 1146 LISNLKILSFSHSVSFFQTICVFGSYLFYLLCYFAYLKYFKLADIQNTLKMQLSSVYFYF 1205

Query: 66   ALAFLVLAMNFND 28
                L+ A  F D
Sbjct: 1206 VTFILIAATYFID 1218


>UniRef50_Q89AT5 Cluster: NADH-quinone oxidoreductase subunit M;
           n=1; Buchnera aphidicola (Baizongia pistaciae)|Rep:
           NADH-quinone oxidoreductase subunit M - Buchnera
           aphidicola subsp. Baizongia pistaciae
          Length = 508

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -3

Query: 222 TFEYDQAK*TALSVFVLPTIFLLFFLDFAMIFRLLNTHS 106
           TF+YD  K T++++ +   I L FFL FA+   ++  HS
Sbjct: 207 TFDYDVLKHTSMNIVLESCIMLGFFLAFAIKIPIVPFHS 245


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,194,319
Number of Sequences: 1657284
Number of extensions: 4392755
Number of successful extensions: 12941
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12933
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11941480628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)