Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21f08
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    28   0.37 
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.1  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   2.6  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   4.6  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    24   6.1  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   6.1  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    24   8.0  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   8.0  

>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -3

Query: 192 ALSVFVLPTIFLLFFLDFAMIFRLLNTHSGFLSRISSAYFNFALAFLVLAMNF 34
           AL+VF+ P   LLFF  + +I R  N+   F  R     F F LA L++   F
Sbjct: 175 ALTVFINPNALLLFFPSY-LILRKCNSSIKF--RQIFVVFLFYLAGLIITSGF 224


>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 29  SLKFIAKTKKANAKLKYADEMRDKNPECVFKRRKIIAKSRKNRRN 163
           S++   K K   A L+Y   +  ++PE + K RK+ A   +  RN
Sbjct: 47  SIEDAEKIKTYPAALRYIFALNSRHPEKLQKLRKMKAMQERQERN 91


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 162 FLLFFLDFAMIFRLLNTHSGFLSRISSAYFN 70
           FLLFFL F+  F  L     FLS+I   YF+
Sbjct: 122 FLLFFLSFSFSFSFL----FFLSQIFIVYFS 148


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -2

Query: 283 DNAYFCINYYAQSRNYLKAKNF*I*SSKMNCVKRFRTTNNISSILPRFRDDLSSLEHA 110
           +NA+ CI+   ++ +    KN  + SS     +R  + N ++S    F  ++SSL+ A
Sbjct: 344 ENAFNCIDMLPRATSSWSTKNSLVFSSNPISNQRLSSLNRVAS----FESNISSLKSA 397


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 169 NNISSILPRFRDDLSSLEHAF 107
           N+ISS++  F +D ++L H+F
Sbjct: 668 NDISSLITIFSNDQANLRHSF 688


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -3

Query: 171 PTIFLLFFLDFAMI--FRLLNTH 109
           PT+FLLFF  ++ +  FR++ +H
Sbjct: 116 PTVFLLFFKFYSRLFFFRIIPSH 138


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = -2

Query: 352 FXRSAFY*FVHEINTYVLSDYD*DNAYFCINYYAQSRNYLKAKNF 218
           F     Y +  E N Y L   D DN     NY      Y  A N+
Sbjct: 294 FSGGLVYQYSEEGNNYGLVVIDGDNVTISKNYETLKEKYASAANY 338


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 174 LPTIFLLFFLDFA-MIFRLLNTHSGFLSRISSAYFNFALAFLVLAMNF 34
           LPT+    F+  +  +FR L++  G  SR     +     +  L +NF
Sbjct: 498 LPTLVYSLFISISPFLFRWLSSMQGLSSRAEEEIYAVGKNYAYLFVNF 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,243,771
Number of Sequences: 5004
Number of extensions: 21403
Number of successful extensions: 61
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)