Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21f08
         (356 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0336 - 2656774-2656992,2657112-2657326,2657611-2657812           31   0.35 
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    27   5.7  
11_01_0198 - 1556215-1556298,1556412-1556580,1556666-1556921,155...    26   7.6  
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997...    26   7.6  
03_03_0278 - 16126803-16129049                                         26   7.6  

>05_01_0336 - 2656774-2656992,2657112-2657326,2657611-2657812
          Length = 211

 Score = 30.7 bits (66), Expect = 0.35
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 187 KRFRTTNNISSILPRFRDDLSSLEHAFGIFVA 92
           K FR+ N+I+  LPRF++ L ++   F  +VA
Sbjct: 38  KTFRSVNSITMGLPRFKEGLRNIRDVFDQYVA 69


>09_02_0393 +
           8510089-8510274,8510450-8510806,8510889-8511011,
           8511209-8511523,8511576-8511682,8512559-8512629,
           8512952-8513029,8513390-8513454,8514224-8514274,
           8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 113 VFKRRKIIAKSRKNRRNIVGSTKTLNAV 196
           VFK+ +++A  +  +  I GST + NAV
Sbjct: 267 VFKKTEVLAAVKHKKSGISGSTNSYNAV 294


>11_01_0198 -
           1556215-1556298,1556412-1556580,1556666-1556921,
           1557000-1557114,1557191-1557441,1557565-1557892,
           1558197-1558358,1558846-1558985,1559325-1559436,
           1560028-1560200,1560411-1560506,1560687-1560930
          Length = 709

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 247 IAHNNLYKNTHCLNRSLIKHKY*FHAQTN 333
           + HN +  N   L  +LI+H + F + T+
Sbjct: 161 VVHNGIITNNEVLKETLIRHGFTFESDTD 189


>09_06_0320 -
           22297579-22297760,22298433-22299358,22299422-22299747,
           22300591-22300660,22301632-22301726,22301917-22302048,
           22302154-22302222,22302953-22303051,22303169-22303253,
           22303353-22303453,22303660-22303728,22303861-22303901,
           22304085-22304303,22304444-22304470,22304562-22304660,
           22304898-22305106,22305382-22305485,22305753-22305894,
           22305991-22306289,22306508-22306903
          Length = 1229

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 175 TTNNISSILPRFRDDLSSLEHAFGIFVAHL 86
           TT+N  S LPR+++   +++ + G  V HL
Sbjct: 234 TTSNEESFLPRWKECSDAIKSSTGSIVLHL 263


>03_03_0278 - 16126803-16129049
          Length = 748

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 74  KYADEMRDKNPECVFKRRKIIAKSRKNRRNI 166
           K   +++DK  E   KR ++ A  +KN++N+
Sbjct: 429 KAKSDLKDKLKEMQTKRSQVAANGKKNKKNM 459


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,985,426
Number of Sequences: 37544
Number of extensions: 105274
Number of successful extensions: 258
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)