Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21f07
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr... 31 0.45
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr... 31 0.45
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ... 31 0.45
L23645-3|AAK26139.1| 211|Caenorhabditis elegans Zinc finger pro... 30 1.4
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 28 4.2
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 28 4.2
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 28 4.2
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 28 4.2
U55375-6|AAC69046.2| 431|Caenorhabditis elegans Hypothetical pr... 27 9.6
>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 31.5 bits (68), Expect = 0.45
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 88 YNGYYVEKKFSKEFLIHIAPDLKNSVDWNGSTRKLLRVLNKRAYRQVLQC 237
YNG Y++ F ++ L+ + D S+ WN ++ R Y + LQC
Sbjct: 57 YNGTYIDDVF-RDHLLKLVVD--KSITWNQVIHSVINTKTDRIYSKCLQC 103
>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 31.5 bits (68), Expect = 0.45
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 88 YNGYYVEKKFSKEFLIHIAPDLKNSVDWNGSTRKLLRVLNKRAYRQVLQC 237
YNG Y++ F ++ L+ + D S+ WN ++ R Y + LQC
Sbjct: 57 YNGTYIDDVF-RDHLLKLVVD--KSITWNQVIHSVINTKTDRIYSKCLQC 103
>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
protein.
Length = 1139
Score = 31.5 bits (68), Expect = 0.45
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 88 YNGYYVEKKFSKEFLIHIAPDLKNSVDWNGSTRKLLRVLNKRAYRQVLQC 237
YNG Y++ F ++ L+ + D S+ WN ++ R Y + LQC
Sbjct: 57 YNGTYIDDVF-RDHLLKLVVD--KSITWNQVIHSVINTKTDRIYSKCLQC 103
>L23645-3|AAK26139.1| 211|Caenorhabditis elegans Zinc finger
protein protein 1,isoform b protein.
Length = 211
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 280 HVYNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRRSLDSP 396
H +NR++ + KR D+ HR ++ + R + SL +P
Sbjct: 37 HNHNRTLLKRTVGGKRKDTGHRHRTSTIPPRDKSSLHAP 75
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 28.3 bits (60), Expect = 4.2
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = +1
Query: 139 IAPDLKNSVD--WNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSHVYNRSIRTHS 312
+ PD N++D WN RV + Y ++ + W + +H +S
Sbjct: 2330 VTPDGANALDVQWNAVLDPKNRV---KGYIIEIRNSDTPVWQEIGGVTNHDAGKSTYFKK 2386
Query: 313 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPI-PHTDWN 450
T +D+ + ++ +VVD+R R + SP ++P+ P T+ N
Sbjct: 2387 LTGLDSDTLYFIRIKVVDQRQRVGVPSPEAQARTGCAAPLSPPTNLN 2433
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 28.3 bits (60), Expect = 4.2
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = +1
Query: 139 IAPDLKNSVD--WNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSHVYNRSIRTHS 312
+ PD N++D WN RV + Y ++ + W + +H +S
Sbjct: 2330 VTPDGANALDVQWNAVLDPKNRV---KGYIIEIRNSDTPVWQEIGGVTNHDAGKSTYFKK 2386
Query: 313 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPI-PHTDWN 450
T +D+ + ++ +VVD+R R + SP ++P+ P T+ N
Sbjct: 2387 LTGLDSDTLYFIRIKVVDQRQRVGVPSPEAQARTGCAAPLSPPTNLN 2433
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 28.3 bits (60), Expect = 4.2
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = +1
Query: 139 IAPDLKNSVD--WNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSHVYNRSIRTHS 312
+ PD N++D WN RV + Y ++ + W + +H +S
Sbjct: 2330 VTPDGANALDVQWNAVLDPKNRV---KGYIIEIRNSDTPVWQEIGGVTNHDAGKSTYFKK 2386
Query: 313 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPI-PHTDWN 450
T +D+ + ++ +VVD+R R + SP ++P+ P T+ N
Sbjct: 2387 LTGLDSDTLYFIRIKVVDQRQRVGVPSPEAQARTGCAAPLSPPTNLN 2433
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 28.3 bits (60), Expect = 4.2
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = +1
Query: 139 IAPDLKNSVD--WNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSHVYNRSIRTHS 312
+ PD N++D WN RV + Y ++ + W + +H +S
Sbjct: 2330 VTPDGANALDVQWNAVLDPKNRV---KGYIIEIRNSDTPVWQEIGGVTNHDAGKSTYFKK 2386
Query: 313 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPI-PHTDWN 450
T +D+ + ++ +VVD+R R + SP ++P+ P T+ N
Sbjct: 2387 LTGLDSDTLYFIRIKVVDQRQRVGVPSPEAQARTGCAAPLSPPTNLN 2433
>U55375-6|AAC69046.2| 431|Caenorhabditis elegans Hypothetical
protein K03E6.7 protein.
Length = 431
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 156 KQRRLERQHAQTAARFKQACLQTGVAVQR----QILLARWHKVCFSCVQQIYSHAQHNSQ 323
K+R L + + A RF++A G+A Q+ Q L+R V C++ + H Q +
Sbjct: 101 KERSLREESQKAAERFERATSILGIAKQQVSLTQESLSRQTSVLPECLEVLNHHIQRVRE 160
Query: 324 TDRQ 335
+ +
Sbjct: 161 VEEE 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,063,877
Number of Sequences: 27780
Number of extensions: 238763
Number of successful extensions: 706
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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