Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21f05
         (376 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   2.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   2.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   4.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   4.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   4.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   4.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   8.3  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -1

Query: 304 YNMIWHIDNP 275
           Y + WH+D P
Sbjct: 39  YELFWHVDQP 48


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -1

Query: 304 YNMIWHIDNP 275
           Y + WH+D P
Sbjct: 39  YELFWHVDQP 48


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 202 LNC*QKQNLYPFDCP 158
           L+C  + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 202 LNC*QKQNLYPFDCP 158
           L+C  + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 202 LNC*QKQNLYPFDCP 158
           L+C  + N++PFD P
Sbjct: 235 LSCQGRLNIFPFDDP 249


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 202 LNC*QKQNLYPFDCP 158
           L+C  + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +3

Query: 285 ICQIMLYGYIVCF 323
           I  ++L+G ++CF
Sbjct: 14  IINVLLHGQVICF 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,273
Number of Sequences: 438
Number of extensions: 1968
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)