Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21f03
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.09 |||mitochondrial translation termination factor|Schi...    29   0.78 
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    29   0.78 
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    29   0.78 
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   2.4  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   3.2  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    26   4.2  
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    26   5.5  

>SPBC1709.09 |||mitochondrial translation termination
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -1

Query: 486 TQLAALLLVGRLQILPEPQQYCLILSAVS*RGSKQLLDR*VTDIALCASLEGPE*AR 316
           TQL AL +  +    P P +    ++AVS +GS+Q++ R   D+ +   L+  E +R
Sbjct: 90  TQLEALFIPSKSIKAPTPSRLLREIAAVSQKGSQQIIIRPFEDVDIKNILKAIEDSR 146


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +3

Query: 255 PFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVV 434
           P  +L   P  P+    PD + L Q +L+    LC        V  L  + +T+L ++ V
Sbjct: 213 PLTVLTQNPNLPKLLERPDINDLHQGILQELDSLCNCLGSSLDVKKLSKQRETLLSHMQV 272

Query: 435 AP 440
            P
Sbjct: 273 NP 274


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 484 PTCRTSSSWQAANSPGATTILSNTVCSFVTRL-KTAA*SVG 365
           PT  T S+  +A+  G TT  SN+  SF+TRL  TAA S G
Sbjct: 766 PTATTISTTTSAS--GITTTASNSRDSFITRLPPTAALSTG 804


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +2

Query: 197 SGRDGASTLQQTPSLDASSALRPFTSRTRFS*MQTGSRRLRAHSGPSKEAHRAMSVTYRS 376
           S  DGAST  + PS DA + + P++     +   +GS         + E+H    +  +S
Sbjct: 4   SNSDGASTSVK-PSDDAVNTVTPWSILLTNNKPMSGSENTL-----NNESHEMSQILKKS 57

Query: 377 SSCFEPR 397
             C++PR
Sbjct: 58  GLCYDPR 64


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 650 RAHHCTAAFSLHQLVHLLVNLIGESLDSLFRWQ 552
           R  +  AA SL + + +  N++ E + S+F W+
Sbjct: 772 RGFYSRAADSLEKSIQICCNVLKEDITSIFSWE 804


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 620 LHQLVHLLVNLIGESLDSLFRWQG 549
           LH +  L+++L+G SL+ LF W G
Sbjct: 79  LHNI--LVIDLLGPSLEDLFEWCG 100


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = +3

Query: 438 PGEFAACQLEEVRQVGSYKKGTMMAGKNVADIVVIMKTLPTKEAVEGLSNKVNEEVNKLM 617
           P E      E +R  G +    + + K++A+   I   +PTKE  E LSN+  E + +L 
Sbjct: 87  PEEIRDMDFEIMRACG-FSARKIDSLKSIAE-ATISGLIPTKEEAERLSNE--ELIERLT 142

Query: 618 KAEGSG 635
           + +G G
Sbjct: 143 QIKGIG 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,137
Number of Sequences: 5004
Number of extensions: 47684
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)