Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21f03
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0229 - 13006869-13007017,13007925-13008089,13008178-130083... 31 0.61
01_06_0208 - 27540077-27540992,27541310-27541497 31 1.1
11_01_0674 - 5502275-5502954,5503054-5504746 29 2.5
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700... 29 2.5
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282... 29 2.5
10_08_0851 - 21065832-21065948,21066361-21066705,21067181-210674... 29 3.3
05_03_0441 - 14037497-14038006,14038208-14038369 29 4.3
02_01_0035 - 220036-221419,222050-222801 29 4.3
06_02_0011 - 10569471-10572245 28 5.7
01_04_0130 + 16462428-16463210,16463644-16463796,16464707-164647... 28 7.6
01_01_0198 + 1718374-1718875,1719591-1719604 28 7.6
>04_03_0229 -
13006869-13007017,13007925-13008089,13008178-13008332,
13010276-13011021
Length = 404
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 188 YPRSGRDGASTLQQTPSLDASSALRPFTSRTRFS 289
+PR G DG L QTPS A+ AL T+ T S
Sbjct: 83 FPRRGEDGVHLLSQTPSSPAAWALSAATTGTAAS 116
>01_06_0208 - 27540077-27540992,27541310-27541497
Length = 367
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Frame = +2
Query: 329 GPSKEAHRAMSVTYRSSSCFEPRHETADSIRQYCCGSGRICSLP--TRRSAASWVLQEGD 502
GPS EA A R + R A RQ CG + P RR SW ++G
Sbjct: 65 GPSAEAAGAWGSVVRLARARRRRAGAACPARQQRCGGFATAARPGNPRRGDVSWDARDGA 124
Query: 503 NDGREERC*YRGHHE 547
R R GH E
Sbjct: 125 RAARRRRQRRVGHAE 139
>11_01_0674 - 5502275-5502954,5503054-5504746
Length = 790
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 593 NLIGESLDSLFRWQGFHDDHDISNVLPG 510
NL+ ESL ++ WQ F D D+ VLPG
Sbjct: 155 NLVIESLSDVYLWQSFDDATDL--VLPG 180
>10_03_0010 +
7007694-7007888,7007994-7008059,7008161-7008334,
7009232-7009306,7009384-7009510,7012280-7012371,
7012496-7012566,7012683-7012792,7013016-7013053,
7013825-7013960,7014382-7014456,7014574-7014697,
7014917-7015013,7015426-7015451,7016180-7016255,
7016499-7016636,7016735-7016872
Length = 585
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 252 PPFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELC-PSPTDQAAVL 389
PP +L + +FP PA D +L L +RH C P P V+
Sbjct: 17 PPPPFILRQLSFPAAVPALDLDILCCRLSRRHRLACLPQPPSDVLVV 63
>03_01_0363 +
2827990-2828055,2828215-2829306,2829715-2829837,
2829994-2830110,2830248-2830429,2830558-2830744,
2830846-2831055,2831177-2831305,2832179-2832247,
2832751-2832873,2832957-2833007,2833101-2833250
Length = 832
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +3
Query: 441 GEFAACQLEEVRQVGSYKKGTMMA----GKNVADIVVIMKTLPTKEAVEGLSNKVNEEVN 608
GE E V V K G ++A GK V V+ +T ++A + K + +
Sbjct: 111 GEIPRQSKERVATVKFNKNGNLVACQVAGKTVDIYRVLDETEAARKAKRRMHRKKEKALA 170
Query: 609 KLMKAEGSGAVV 644
K M AEG+G V+
Sbjct: 171 KSMAAEGNGTVI 182
>10_08_0851 -
21065832-21065948,21066361-21066705,21067181-21067489,
21067574-21067648,21067754-21067917,21067994-21068432
Length = 482
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 209 GASTLQQTPSLDASSALRPFTSRTRFS*MQTGSRRLRAHSGP 334
G + TPS+DA + R F+ + FS GS HSGP
Sbjct: 20 GCCSSSTTPSMDAVNLSRTFSDVSSFSEEHGGSGSSVDHSGP 61
>05_03_0441 - 14037497-14038006,14038208-14038369
Length = 223
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 434 GSGRICSLPTRRSAASWVLQEGDNDGREERC 526
G GRI S +R + W L GD GR E+C
Sbjct: 4 GGGRIRSATGKRCSWRWRLDHGDG-GRREKC 33
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 584 GESLDSLFRWQGFHDDHDISNVLPGHHCPLLVGPNLPHFF*LAGCKFSR 438
G+ L + FR+Q H H + HH P + P+L HF G F++
Sbjct: 46 GQELGAPFRYQPLHH-HALPQHHHHHHPPPQMPPHLAHFGGAGGIPFTQ 93
>06_02_0011 - 10569471-10572245
Length = 924
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +3
Query: 279 PAFPRCKPAPDDSVLTQALLKRHTEL--CPSPTDQAAVLSLVTKLQTVLDNIVVAPGEFA 452
PAFP K P SVL L R+ C S + A++++++ L T L +
Sbjct: 227 PAFPPYKHQPATSVLRSNYLDRYKLFVSCNSTSFVASLVTVILLLSTELSKHGIRSKAVI 286
Query: 453 ACQLEEVR-QVGSYKKG 500
C + ++ VG+Y G
Sbjct: 287 VCVVADLLCLVGAYAAG 303
>01_04_0130 +
16462428-16463210,16463644-16463796,16464707-16464784,
16465229-16465348,16465419-16465585,16465683-16465710
Length = 442
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 402 KLQTVLDNIVVAPGEFAACQLEEVRQVGSYKKGTMMAG-KNVADIVVIMKTLPT 560
K+QTV++ I ++ QLE + + S + +G + D+ ++K+LPT
Sbjct: 387 KIQTVVNKIDAIQNDYRTMQLEVLAGIDSLVTTVIESGLRFQVDLSTVIKSLPT 440
>01_01_0198 + 1718374-1718875,1719591-1719604
Length = 171
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +2
Query: 317 RAHSGPSKEAHR-AMSVTYRSSSCFEPRHETADSIRQYCCGS-GRICSLPTRRSAASWVL 490
R H G + A A + + CFE R ET ++R GS GR + W+
Sbjct: 16 RRHGGLGRLAEGVANGCIWPAQQCFEERSETGLALRGVADGSGGRYDARGVAGEDGGWLR 75
Query: 491 QEGDNDG 511
G DG
Sbjct: 76 ARGTADG 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,172,869
Number of Sequences: 37544
Number of extensions: 363872
Number of successful extensions: 876
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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