Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21f03
         (660 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    26   0.92 
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   3.7  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   3.7  
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             24   4.9  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    24   4.9  
AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative 5'-nucleo...    23   8.5  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 26.2 bits (55), Expect = 0.92
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 366 PTDQAAVLSLVTKLQTVLDNIVVAPGEFAACQLEEVRQVGSYKKGTMMAGKNVADIVVI 542
           PTD+        +L+T+  + VV  G+F A  +E   +  S K   +++     D+VV+
Sbjct: 98  PTDEFERFIEAVQLETLTHSQVVIAGDFNAWHVEWGSERNSEKGEELLSAIQQLDLVVL 156


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 170  RSWWTRYPRSGRDGASTLQQTP 235
            R+W  RY    + G  TL++TP
Sbjct: 1876 RTWGMRYEYDNQSGLLTLKRTP 1897


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 170  RSWWTRYPRSGRDGASTLQQTP 235
            R+W  RY    + G  TL++TP
Sbjct: 1877 RTWGMRYEYDNQSGLLTLKRTP 1898


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 294 CKPAPDDSVLTQALLKRHTELCPSPTD 374
           CK APD + +T+ L+       P+PTD
Sbjct: 611 CK-APDQAAVTRPLMAADLGAGPAPTD 636


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 270 LAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVL 419
           +AEP      PAP+  +L   + +   + C      A +L  +T +  +L
Sbjct: 103 IAEPKAASATPAPELELLRATIQRLEEQNCAMKEQNAKLLEQITGMCQLL 152


>AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative
           5'-nucleotidase protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 330 ALLKRHTELCPSPTDQAAVLSLVTKLQTV 416
           A+LK+ T     P D   ++  V K QT+
Sbjct: 510 AMLKKGTNRVTGPLDSDVLIEYVRKRQTI 538


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,368
Number of Sequences: 2352
Number of extensions: 12489
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)