Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21f03
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-4|CAB07644.1|  370|Caenorhabditis elegans Hypothetical pr...    35   0.059
Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    29   3.9  
L15314-7|AAF99989.1|  346|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor...    27   8.9  
AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor medi...    27   8.9  

>Z93386-4|CAB07644.1|  370|Caenorhabditis elegans Hypothetical
           protein R11H6.5 protein.
          Length = 370

 Score = 34.7 bits (76), Expect = 0.059
 Identities = 25/98 (25%), Positives = 41/98 (41%)
 Frame = +3

Query: 312 DSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGEFAACQLEEVRQVGSY 491
           D+V  + +L R   L PS   +  +     K+   L+             +  +  VGS+
Sbjct: 38  DAVFEKEILDRAANLTPSVEIRKRINEYAKKVIVALEK-EKREKTLVDIGIATISHVGSF 96

Query: 492 KKGTMMAGKNVADIVVIMKTLPTKEAVEGLSNKVNEEV 605
              T     + +D+VV + TLP+ E V  L  KV E +
Sbjct: 97  VTDTTTHSSDKSDVVVQLSTLPSYETVAELGRKVVENM 134


>Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical
           protein ZK858.2 protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 23/90 (25%), Positives = 39/90 (43%)
 Frame = +3

Query: 267 LLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVVAPGE 446
           LLA P     +P P    +  + L+  T +  SPTD   +  LVT    +   +++ P +
Sbjct: 17  LLATPPVAIRRPLPYPRDIISSPLEVATPVTVSPTDFMPIRELVTTPYHISTPVLITPVD 76

Query: 447 FAACQLEEVRQVGSYKKGTMMAGKNVADIV 536
             +   E VR     +  T  A ++V + V
Sbjct: 77  ARSISREIVRVNRIRRVRTRQASRSVFNSV 106


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 477 QVGSYKKGTMMAGKNVADIVVIMKTLPTKEAVEGLSNKVNEEVNKL 614
           +VG   KGT + G   A++V+    +PT   VE +     E    L
Sbjct: 331 RVGIIAKGTFIKGDRCAEVVLTCTPVPTSGLVEQIRRLFGESTTSL 376


>L15314-7|AAF99989.1|  346|Caenorhabditis elegans Hypothetical
           protein K06H7.8 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 659 LVTRAH--HCTAAFSLHQLVHLLVNLIGESLDSLFRWQG 549
           L+++ H   C A+    +  ++++ L+GESLDSL +  G
Sbjct: 72  LISKKHVAKCVASGKKERYSYMVMTLLGESLDSLLKKHG 110


>Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical
           protein D2085.3 protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 332 PSKEAHRAMSVTYRSS--SCFEPRHETADSIRQYCCGSGRICSLPTRRSAASWVLQ 493
           P KE H  +++    +    F P HE+       C G+  IC++P    A SW+++
Sbjct: 12  PKKEEHPLVAIVILDAFDQRFAPTHESYP-----CFGTIPICNVPAINFALSWLMR 62


>AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor
           RME-2 protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 398 HETADSIRQYCCGSGRICSLPTRRSAASWVLQEGDNDGREERC*YRGH 541
           + T D  +++ CG+GR+  +P      +  + + DN   E  C Y  H
Sbjct: 29  NSTCDQAKEFDCGNGRLRCIPAEWQCDN--VADCDNGRDESGCSYAHH 74


>AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor
           mediated endocytosis protein2 protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 398 HETADSIRQYCCGSGRICSLPTRRSAASWVLQEGDNDGREERC*YRGH 541
           + T D  +++ CG+GR+  +P      +  + + DN   E  C Y  H
Sbjct: 29  NSTCDQAKEFDCGNGRLRCIPAEWQCDN--VADCDNGRDESGCSYAHH 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,172,136
Number of Sequences: 27780
Number of extensions: 287810
Number of successful extensions: 678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)