Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21f02
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    31   0.17 
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    29   0.90 
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   8.4  

>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 47  SCPYHILTLKPPILRRDTMRSSVHNGCENEQANIELGLRVSFSELATDP 193
           SCP   LT + PIL+R T+R  + +   +  A + +  R + S L T P
Sbjct: 421 SCPGFTLTTQQPILKRPTLRKELSSRALHTTATL-MKYRANASSLRTTP 468


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +1

Query: 601 PASSCLINLKICKRIKNR*QCNIFISS 681
           P SSC    KICKR+ NR Q  +F+SS
Sbjct: 108 PHSSCF---KICKRLYNRIQILVFMSS 131


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 137 QANIELGLRVSFSELATDPHTNYI 208
           Q+ ++L LR   +  ATDPH  Y+
Sbjct: 466 QSQLDLALRQPGTITATDPHKEYV 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,429
Number of Sequences: 5004
Number of extensions: 50278
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)