Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21f02
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.24 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.24 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.0  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   6.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 192 GSVASSEKLTLNPNSMFACSFSQP 121
           GSV + E +TL  N ++ CS S P
Sbjct: 292 GSVLALEAVTLEDNGIYRCSASNP 315


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 192 GSVASSEKLTLNPNSMFACSFSQP 121
           GSV + E +TL  N ++ CS S P
Sbjct: 292 GSVLALEAVTLEDNGIYRCSASNP 315


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 238 FINFLKRFKLLYHILTGRIK 297
           F+N LK+  +L H   GR+K
Sbjct: 425 FLNQLKKSSVLVHTKNGRLK 444


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
 Frame = +3

Query: 432 GNFLAVYKMSKRSVYLYV-----LN*KWIFR 509
           GN   VY++ KRS + Y+      N +W FR
Sbjct: 292 GNNFPVYQVEKRSPFRYLGARGKKNPRWEFR 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,388
Number of Sequences: 438
Number of extensions: 3524
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)