Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21e21
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    27   2.6  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   4.5  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   6.0  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    25   7.9  

>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = -2

Query: 261 TGACSSSEDLAESFVLVAAGGRPRFLSSFDSGCVPLAFG 145
           TG C    +    F +    G    L  F  GC+  +FG
Sbjct: 628 TGVCIEETEKRPVFTMFGISGMGNHLQIFGGGCICFSFG 666


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 101 SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAK 235
           SD    VV++K   R + N  +  S  ++K+G  PAA  TK +AK
Sbjct: 384 SDGIHLVVDEKSNFREE-NFQRAMSALMEKQGDDPAAMATKGNAK 427


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 143 RPKANGTQPESKELKKRGRPPAATRTKDSAKSSD 244
           +P   G++P  K  +KRGRPP    +  S K  D
Sbjct: 112 KPIDEGSEPIIK--RKRGRPPKIKSSSPSTKLDD 143



 Score = 25.4 bits (53), Expect = 6.0
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +2

Query: 104 DDGSTVVEKKGRGR-PKANGTQPESK---ELK-KRGR 199
           D+GS  + K+ RGR PK   + P +K    LK KRGR
Sbjct: 115 DEGSEPIIKRKRGRPPKIKSSSPSTKLDDPLKPKRGR 151


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 153 PMEHNLSRKNLKNEVGLQLPPE 218
           P E N++ +N+KNE    +P E
Sbjct: 45  PFESNINIRNIKNEESYDIPNE 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,452
Number of Sequences: 5004
Number of extensions: 36608
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)