Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21e18
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 30 0.20
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 29 0.34
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 27 2.4
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 2.4
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 2.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 3.2
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 4.2
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 5.6
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 25 5.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.6
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 25 7.3
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 7.3
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 7.3
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.3
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 9.7
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 25 9.7
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 25 9.7
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 9.7
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 30.3 bits (65), Expect = 0.20
Identities = 22/79 (27%), Positives = 42/79 (53%)
Frame = +2
Query: 110 FTPIEDSAGLVFERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKN 289
+T +++ L+FER +R D+ V V KF+F S LQE+ ++ +K + + + +N
Sbjct: 264 YTNVQNEYELMFERDTEIRKAEDQTAVPVAKFSFVS-LQEVGDV-AKDAVIDV-IGVLQN 320
Query: 290 VRQIKQNRSSNIKTRIEKQ 346
V ++Q S +K+
Sbjct: 321 VGPVQQITSRATSRGFDKR 339
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 29.5 bits (63), Expect = 0.34
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +2
Query: 266 AQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEY 445
A S N ++ ++ S + + E Q L L FIT S+ DSI E + D
Sbjct: 559 ANESISSNHEKLMESESDRLSKKWENP-QLLAQLKSRFITGSLLDSIEGQEEVSQDD--- 614
Query: 446 DDGVDFDVYDEYEPSS 493
++G DF+ ++ E SS
Sbjct: 615 EEG-DFEDLEDEENSS 629
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 101 RITFTPIEDSAGLVFERMYGLRHHTDER 184
RI F P+ED + +VF ++ ++ DE+
Sbjct: 290 RIVFRPVEDHSHIVFAQLTHYKNKKDEK 317
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.6 bits (56), Expect = 2.4
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +2
Query: 128 SAGLVFERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQ 307
S LVF YG R T + + S E++ +K K E AQ+S +N+ Q
Sbjct: 592 SIHLVFRSAYGDREITRRTDPLPSRSIYFSENVEMDLVKRKEEQLNAQLSQLENL----Q 647
Query: 308 NRSSNIKTRIEKQLQFLTPLN 370
N ++ ++ + L+ N
Sbjct: 648 NEERKLQEKVNEHESLLSRTN 668
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.6 bits (56), Expect = 2.4
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 152 MYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKT 331
MY + H TD + V NF + L+ +E + +++ +++ KQ+ + N
Sbjct: 686 MYIVTHETDWKVVQYILINFTNQLRNTKMFTKTVEALQLLLNSLRDIINGKQSLNINFSD 745
Query: 332 --RIEKQLQFLTPLNKNFITY 388
RIE L L+ + + Y
Sbjct: 746 FFRIEDLLVSLSKILSVLMVY 766
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 290 VRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEYDDGV 457
+R++K+N S + +IEK++ + + ++ IS E+L+ L DD V
Sbjct: 1069 LRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELLEKAILGGDDTV 1124
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +3
Query: 390 LW-KTAFQATKCWTTSIWNMTTALI 461
LW + A TK W T IWN L+
Sbjct: 666 LWNENAIMGTKRWLTKIWNCVHQLL 690
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 5.6
Identities = 19/76 (25%), Positives = 39/76 (51%)
Frame = +2
Query: 224 QELNNIKSKIELYEAQVSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDS 403
+EL ++ K +LY+ Q + K + + +NIK+ + K+L+ +N S++
Sbjct: 1093 KELESLNDKDQLYQLQATKNKELEAKVKECLNNIKS-LTKELENKEEKCQNLSDASLK-Y 1150
Query: 404 ISSNEVLDNIDLEYDD 451
I E+ +N+ L+ D
Sbjct: 1151 IELQEIHENLLLKVSD 1166
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 164 RHHTDERFVFVKKFN-FASVLQELNNI 241
R T+ERF+F K N F S++Q NI
Sbjct: 254 RSETEERFLFTKTCNVFRSLIQIQKNI 280
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 5.6
Identities = 21/86 (24%), Positives = 42/86 (48%)
Frame = +3
Query: 228 SSIISNLKLNYMKRKFRLAKTSDK*NKTDRVTSKPALKSSCSF*RRLTKISSHTLWKTAF 407
S+I+S+ ++ + A S + T+ T +L S S R ++ S++ + T+F
Sbjct: 758 SAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNE-YNTSF 816
Query: 408 QATKCWTTSIWNMTTALILTFTMNTN 485
A +T+ + TT+L +N+N
Sbjct: 817 HAPTVSSTTSSSSTTSLAANKGVNSN 842
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 25.0 bits (52), Expect = 7.3
Identities = 20/80 (25%), Positives = 37/80 (46%)
Frame = +2
Query: 302 KQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISSNEVLDNIDLEYDDGVDFDVYDEY 481
K++ N T + F +PL + T S S SN+ LD + + ++ F+ E+
Sbjct: 225 KRDSEINAVTAVSADGSF-SPLTE---TLSSTISTLSNDSLDGLSSQKNEFTGFNSNSEW 280
Query: 482 EPSSHWSNMTVSDAKALLQN 541
P+ + SDA +++ N
Sbjct: 281 IPNDTVDYICNSDASSVVSN 300
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 218 VLQELNNIKSKIELYEAQVSTCK-NVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSV 394
+L+E K+ L Q+ + +++Q +N SN+ + E Q++ L ++ +T S
Sbjct: 524 LLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSL----ESSLTNSQ 579
Query: 395 EDSISSNEVLDNIDLEYDD 451
+ +S E ++ ++ + D+
Sbjct: 580 AECVSFQEKINELNSQIDE 598
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 395 EDSISSNEVLDNIDLEYDDGVDFDVYDEYEPS 490
ED I S E D E D+G+D + ++ +PS
Sbjct: 40 EDEIESEEEYIEADGEKDNGMDEEEQNDAQPS 71
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 77 TNTVVGRDRITFTPIEDSAGLVFERMYGLRHHTDERFVFVKKFNFASVLQEL 232
+ T++GR IT PI+ + + Y H+ + KF+++ L++L
Sbjct: 25 SQTIIGRTDITVNPIDSNLQKIVLDCYQAEIHSVYVNGDLTKFSYSDALKKL 76
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 24.6 bits (51), Expect = 9.7
Identities = 28/107 (26%), Positives = 48/107 (44%)
Frame = +2
Query: 92 GRDRITFTPIEDSAGLVFERMYGLRHHTDERFVFVKKFNFASVLQELNNIKSKIELYEAQ 271
G +R+ T + +G + +R G E+F +KKF+ + +E+N SK+ +E
Sbjct: 905 GIERVCNTILRIDSGGIRDRRGGAFRKLSEQFASIKKFS-DLLFEEVN--WSKVRDFEFC 961
Query: 272 VSTCKNVRQIKQNRSSNIKTRIEKQLQFLTPLNKNFITYSVEDSISS 412
+ K R QN+ S I FLT + Y +E +I +
Sbjct: 962 EAFEK--RNFLQNKLSG--NPIISTPNFLTHFALAYQEYELESNIDN 1004
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 372 KISSHTLWKTAFQATKCWTTSIWNMTTALILT 467
K S+H+ WK Q W T++ + L+ T
Sbjct: 236 KFSAHSFWKEFIQYGATWYTAVPTIHQILLRT 267
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 335 IEKQLQFLTPLNKNFITYSVEDSI 406
+EKQ+ +++ LNK + +SV + I
Sbjct: 132 LEKQIHYISDLNKRPVIFSVIEQI 155
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 92 GRDRITFTPIEDSAGLVFERM-YGLRHHTDERFVFVKKFNFASVL 223
GRDR + + LV ERM Y ++ TD++ V + N+ S L
Sbjct: 599 GRDRNIDSSLSGKM-LVLERMLYQIKQETDDKIVLIS--NYTSTL 640
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,668
Number of Sequences: 5004
Number of extensions: 38438
Number of successful extensions: 168
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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