Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21e16
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 69 7e-13
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 67 2e-12
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 67 2e-12
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 62 6e-11
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 61 1e-10
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 61 1e-10
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 60 3e-10
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 59 4e-10
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 57 2e-09
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 57 2e-09
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 56 3e-09
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 56 4e-09
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 56 4e-09
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 55 7e-09
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 55 1e-08
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 54 2e-08
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 54 2e-08
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 52 7e-08
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 52 9e-08
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 47 2e-06
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 25 8.9
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 68.5 bits (160), Expect = 7e-13
Identities = 34/91 (37%), Positives = 55/91 (60%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
K GG G+NLIG N +++ +P WNP + QA R+ R GQ K+ +VY+ + +IE+ I
Sbjct: 688 KAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRF--IATGTIEEKI 745
Query: 182 KQRQDKKIAFVNTVFEETLINYEDIKKFFNL 274
QRQ K + + V +E +D+++ F+L
Sbjct: 746 FQRQSHKQSLSSCVVDEA----QDVERHFSL 772
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 67.3 bits (157), Expect = 2e-12
Identities = 32/77 (41%), Positives = 48/77 (62%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
K G VGLNL NH+++L+P WNP IE QA DR R+GQ K + ++ V +N+IE+ +
Sbjct: 943 KAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRI--VTNNTIEERV 1000
Query: 182 KQRQDKKIAFVNTVFEE 232
QD+K +++ E
Sbjct: 1001 LALQDRKRELIDSALGE 1017
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLN---VEDNSIE 172
+ GG+G+NL G + ++ + WNPQ++ QAQDR R+GQT++ ++Y++++ VE N +
Sbjct: 1067 RSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLR 1126
Query: 173 KYIKQRQDKKIAFVNTVFEETLINYEDIKKFFNL 274
+ ++R KI F D+ F+L
Sbjct: 1127 RANQKRMLDKIVIQGGEFTTEWFRKADVLDLFDL 1160
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 62.1 bits (144), Expect = 6e-11
Identities = 29/67 (43%), Positives = 45/67 (67%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
KCG +GLNL + +++ + WNP IE QA DR+ R+GQ ++ VYK+ V +N+IE+ I
Sbjct: 730 KCGALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKL--VVENTIEEKI 787
Query: 182 KQRQDKK 202
+ Q+ K
Sbjct: 788 VELQNLK 794
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 61.3 bits (142), Expect = 1e-10
Identities = 26/77 (33%), Positives = 47/77 (61%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
+ GG+G+NL G + +++ +P WNP + QA++R R+GQ K+ VY+++ +IE+ I
Sbjct: 702 RVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTA--GTIEEKI 759
Query: 182 KQRQDKKIAFVNTVFEE 232
RQ K N + ++
Sbjct: 760 YHRQIFKQFLTNKILKD 776
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 61.3 bits (142), Expect = 1e-10
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
K G VGLNL NH+++ EP +NP IE QA DR+ R+GQ K VY+ + ++IE+ I
Sbjct: 801 KAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRF--ITKDTIEERI 858
Query: 182 KQRQDKKIAFVNTVFE 229
Q KK V +
Sbjct: 859 VSVQRKKRQLVKEALD 874
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 60.1 bits (139), Expect = 3e-10
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
K GGVGLNL NH+ +++P W+ +E QA DRI R+GQ K +V + + V D ++E+ +
Sbjct: 1041 KAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYI-VRD-TVEERM 1098
Query: 182 KQRQDKKIAFVNTV----FEETLINYEDIKKFF 268
+ Q++K T+ ++ + + EDIK F
Sbjct: 1099 LKIQERKNFITGTLGMSEGKQQVQSIEDIKMLF 1131
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 59.3 bits (137), Expect = 4e-10
Identities = 26/68 (38%), Positives = 43/68 (63%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
+ GG+GLNL + +++ + WNP +LQAQDR R+GQTK +Y++ + + S+E+ I
Sbjct: 813 RAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRL--ITEKSVEENI 870
Query: 182 KQRQDKKI 205
R K+
Sbjct: 871 LARAQYKL 878
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 57.2 bits (132), Expect = 2e-09
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
K GGV LNL + + M++P WN ++ QA DRI R+GQ + V + +NSIE I
Sbjct: 870 KAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITL--CIENSIESKI 927
Query: 182 KQRQDKKIAFVNTVFEE 232
+ Q+KK ++ ++
Sbjct: 928 IELQEKKAQMIHATIDQ 944
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 56.8 bits (131), Expect = 2e-09
Identities = 26/68 (38%), Positives = 42/68 (61%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
+ GG+GLNL + +++ + WNP +LQAQDR R+GQTK + ++ + + SIE+ I
Sbjct: 1264 RAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRL--ITEKSIEENI 1321
Query: 182 KQRQDKKI 205
R K+
Sbjct: 1322 LSRAQYKL 1329
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 56.4 bits (130), Expect = 3e-09
Identities = 26/69 (37%), Positives = 45/69 (65%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
K GG G+NL N +++ + +NP +LQA+DR R+GQ + V ++ + DN+IE+YI
Sbjct: 1000 KAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTVIRL--ITDNTIEEYI 1057
Query: 182 KQRQDKKIA 208
++ + K+A
Sbjct: 1058 QKLANTKLA 1066
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 56.0 bits (129), Expect = 4e-09
Identities = 30/74 (40%), Positives = 48/74 (64%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
K GG G+NL N +++ + +NP +LQA+DR R+GQ K VYK + V+D +IE++I
Sbjct: 837 KAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYKFV-VKD-TIEEHI 894
Query: 182 KQRQDKKIAFVNTV 223
++ + KIA T+
Sbjct: 895 QRLANAKIALDATL 908
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 56.0 bits (129), Expect = 4e-09
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
K GG GLNL G +++ EP WNP +LQA RI R GQ + +Y L+ +I
Sbjct: 610 KAGGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSGQKRPVCIYTFLSSGMLDERIFI 669
Query: 182 KQ--RQDKKIAFVNT--VFEETLINYEDIKKFFN 271
+Q +Q +F+++ ++ EDIK F+
Sbjct: 670 RQNTKQGLSSSFIDSDASQKKNFFTGEDIKTLFS 703
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 55.2 bits (127), Expect = 7e-09
Identities = 28/75 (37%), Positives = 43/75 (57%)
Frame = +2
Query: 8 GGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYIKQ 187
GG+GLNL G + ++ +E WNP +LQA DR R+GQ K VY++ + +E+ I
Sbjct: 1801 GGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRL--ITRGCLEEKIMG 1858
Query: 188 RQDKKIAFVNTVFEE 232
Q K+ +TV +
Sbjct: 1859 LQRFKMNVASTVVNQ 1873
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 54.8 bits (126), Expect = 1e-08
Identities = 23/68 (33%), Positives = 45/68 (66%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
+ GG+G+NL+ + +++ + WNPQ +LQA R R+GQ + VY++L+ ++IE+ +
Sbjct: 767 RAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLS--KDTIEEDV 824
Query: 182 KQRQDKKI 205
+R +K+
Sbjct: 825 LERARRKM 832
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 54.0 bits (124), Expect = 2e-08
Identities = 24/74 (32%), Positives = 48/74 (64%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
K GG G+NL N +++ + +NP ++QA+DR R+GQT+ +VY++ + N+IE+ I
Sbjct: 840 KSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRL--ITKNTIEENI 897
Query: 182 KQRQDKKIAFVNTV 223
++ + K+ +++
Sbjct: 898 RRLANTKLTLESSL 911
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 53.6 bits (123), Expect = 2e-08
Identities = 29/86 (33%), Positives = 47/86 (54%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
+ GGVG+NL + +++L+P +NP ++QA R R GQ K V+ +L D S+E+ I
Sbjct: 948 RAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVF-VLTTRD-SVEEKI 1005
Query: 182 KQRQDKKIAFVNTVFEETLINYEDIK 259
Q KK+ + + E N+ K
Sbjct: 1006 IQNAQKKLVLDHLIVESLDQNHNSEK 1031
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 52.0 bits (119), Expect = 7e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
+ GG+G+NL + +++ + WNPQ +LQA R R+GQ + VY+ L+ +++E+ I
Sbjct: 781 RAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLS--KDTVEEDI 838
Query: 182 KQRQDKKI 205
+R +K+
Sbjct: 839 LERARRKM 846
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 51.6 bits (118), Expect = 9e-08
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +2
Query: 2 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
+ GG+G+NL + ++ + WNP I+ QA DR R+GQ K VY+ + +IE+ I
Sbjct: 1505 RAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRF--ITRGTIEERI 1562
Query: 182 KQRQDKK 202
R +K
Sbjct: 1563 VIRAKEK 1569
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 47.2 bits (107), Expect = 2e-06
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +2
Query: 17 GLNLIGGNHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYI 181
GL L H+ M EP N IE+QA R+ R+GQT+ T+VY + VED ++E +I
Sbjct: 1265 GLTLTNATHVFMCEPLLNSGIEMQAISRVHRIGQTRPTFVYYYI-VED-TVEGHI 1317
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 8.9
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 412 KTVLCCAYVVRR 447
KT LCC+YV+R+
Sbjct: 63 KTKLCCSYVIRK 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,213
Number of Sequences: 5004
Number of extensions: 49206
Number of successful extensions: 163
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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